Browse Element(s) Details


Os.36056.1.A1_at

Description gb:AK064569.1
DB_XREF= gi:32974587
TID=Os.36056.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36056 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-D07, full insert sequence.
FL= gb:AK064569.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g166601/11hypothetical protein
LOC_Os04g176101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16590OsAffx.17744.1.S1_at11/119+10184189..10185583Protein kinase domain containing protein
LOC_Os09g16600Os.26886.6.S1_s_at5/119+10188250..10190753hypothetical protein
LOC_Os09g16600Os.26886.2.S1_s_at3/119+10188250..10190753hypothetical protein
LOC_Os09g16600OsAffx.16467.1.S1_at3/119+10188250..10190753hypothetical protein
LOC_Os09g16610NANA9+10191709..10192095hypothetical protein
LOC_Os09g16620Os.26886.1.S1_x_at1/119+10193999..10195657transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g16630Os.26886.3.S1_x_at1/119+10196559..10196987transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g16640NANA9+10198798..10200195Transposable element protein, putative, MuDR
LOC_Os09g16650OsAffx.17745.1.S1_at11/119+10202804..10203856Legume lectins alpha domain containing protein
LOC_Os09g16660OsAffx.6305.1.S1_at10/119+10206266..10210552hypothetical protein
LOC_Os09g16660Os.36056.1.A1_at1/119+10206266..10210552hypothetical protein
LOC_Os09g16660OsAffx.9652.1.S1_x_at1/119+10206266..10210552hypothetical protein
LOC_Os09g16670NANA9+10212401..10213070Legume lectins alpha domain containing protein
LOC_Os09g16680NANA9+10214246..10216267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16690NANA9+10216590..10219640retrotransposon protein, putative, unclassified
LOC_Os09g16700NANA9+10221168..10221830Legume lectins beta domain containing protein
LOC_Os09g16710OsAffx.17746.1.S1_at11/119+10223463..10225382expressed protein
LOC_Os09g16720OsAffx.17747.1.S1_at10/119+10228039..10228354hypothetical protein
LOC_Os09g16729Os.37916.1.S1_at3/119+10232559..10233300NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36056.1.A1_at--764--2016Chr08:4874011..4874035 (25 bp)
ACTCAACCCGATGATGTACACCAAG
NONE
Os.36056.1.A1_at--846--5391Chr04:4895651..4895675 (25 bp)
GAAATCCGCCGATCTTAGCCGTAGC
NONE
Os.36056.1.A1_at--820--65724Chr11:6562993..6563014 (22 bp)
GATTCGGACTTCAGCCGATCTTACT
NONE
Os.36056.1.A1_at--1006--433Chr09:1497357..1497381 (25 bp)
ATCTTACTCTGTTCCCCGATCGATT
NONE
Os.36056.1.A1_at--127--211Chr04:4895586..4895610 (25 bp)
ATTTCCATCTCGGATTCTACTTTTA
NONE
Os.36056.1.A1_at--427--10371Chr04:4895566..4895590 (25 bp)
TTTTATTCCATCTCTATCTCCGATA
NONE
Os.36056.1.A1_at--1066--7891Chr04:4895477..4895501 (25 bp)
GGTTCCGCAAAATTTCGTTTCACAT
NONE
Os.36056.1.A1_at--1046--4831Chr04:4895416..4895440 (25 bp)
GCTAAGGTGCTTTTCGACAATGACA
NONE
Os.36056.1.A1_at--133--171NONE
ATTATTCTCCTAATTCTGTCCAGGT
NONE
Os.36056.1.A1_at--1138--1991Chr04:4895291..4895315 (25 bp)
ACTAGCTTCAGTGCACGACATCAAC
NONE
Os.36056.1.A1_at--739--3671NONE
CTTTCATATTTCCTTACCTGTACAT
NONE
Target Sequence 
ACTCAACCCGATGATGTACACCAAGTTGTATTGTTGGATTTAGCTAAATCGGCTAACCTCGTCCGACTCGAAATCCGCCG
ATCTTAGCCGTAGCCGATTCGGACTTCAGCCGATCTTACTCTGTTCCCCGATCGATTTCCATCTCGGATTCTACTTTTAT
TCCATCTCTATCTCCGATACTTAGATTACCAAATTTGGTCGTTAACAACATGTAGCTAACATTGTTTTTTTTCTTAGGTG
AAGGGTTCCGCAAAATTTCGTTTCACATTGTGAACGTCCTGAAAAAGTTGGCTTGTTTGGTGAAGCTAAGGTGCTTTTCG
ACAATGACAACGTGGAATAGTCTATACAATCACATCATGAATTGAAATATTAATTATTTGGATCTTNGTATTATTCTCCT
AATTCTGTCCAGGTACATAGAATGATGTCACTAGCTTCAGTGCACGACATCAACTAATTAATAAATGTCAGGCTACTTTT
TAAAATAATATTGCACATATAACTTTCATATTTCCTTACCTGTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36056.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis