Browse Element(s) Details


OsAffx.17746.1.S1_at

Description tigr:9637.m01407
TID=OsAffx.17746.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1671011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16640NANA9+10198798..10200195Transposable element protein, putative, MuDR
LOC_Os09g16650OsAffx.17745.1.S1_at11/119+10202804..10203856Legume lectins alpha domain containing protein
LOC_Os09g16660OsAffx.6305.1.S1_at10/119+10206266..10210552hypothetical protein
LOC_Os09g16660Os.36056.1.A1_at1/119+10206266..10210552hypothetical protein
LOC_Os09g16660OsAffx.9652.1.S1_x_at1/119+10206266..10210552hypothetical protein
LOC_Os09g16670NANA9+10212401..10213070Legume lectins alpha domain containing protein
LOC_Os09g16680NANA9+10214246..10216267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16690NANA9+10216590..10219640retrotransposon protein, putative, unclassified
LOC_Os09g16700NANA9+10221168..10221830Legume lectins beta domain containing protein
LOC_Os09g16710OsAffx.17746.1.S1_at11/119+10223463..10225382expressed protein
LOC_Os09g16720OsAffx.17747.1.S1_at10/119+10228039..10228354hypothetical protein
LOC_Os09g16729Os.37916.1.S1_at3/119+10232559..10233300NA
LOC_Os09g16740NANA9+10240972..10244215hypothetical protein
LOC_Os09g16750NANA9+10245898..10246495retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17746.1.S1_at--492--1151Chr09:10224407..10224431 (25 bp)
AGTCGATGGCGGTGCGTGGAGTCAA
LOC_Os09g16710
OsAffx.17746.1.S1_at--856--3251Chr09:10224332..10224356 (25 bp)
CAACGGCTGAGTGCGGAGGAGTCAA
LOC_Os09g16710
OsAffx.17746.1.S1_at--596--3971Chr09:10224274..10224298 (25 bp)
CGGTGGCACATAAGGGTGAAGCACT
LOC_Os09g16710
OsAffx.17746.1.S1_at--888--1291Chr09:10224223..10224247 (25 bp)
AGATGATGGAATCAACTGCAGCGAT
LOC_Os09g16710
OsAffx.17746.1.S1_at--966--3971Chr09:10223747..10223769 (23 bp)
CGGTGTAGATGTGGCAACGACGACA
LOC_Os09g16710
OsAffx.17746.1.S1_at--52--3191Chr09:10223724..10223748 (25 bp)
CAATAGTGTGGATGGATGCGACGCT
LOC_Os09g16710
OsAffx.17746.1.S1_at--157--8271Chr09:10223591..10223615 (25 bp)
GGCATCCCTTCACGCGGAGGCGACA
LOC_Os09g16710
OsAffx.17746.1.S1_at--516--4311Chr09:10223585..10223609 (25 bp)
CCTTCACGCGGAGGCGACAGAGCGA
LOC_Os09g16710
OsAffx.17746.1.S1_at--1101--4851Chr09:10223549..10223573 (25 bp)
GCTAGGGAGCATGATGACCCGACCG
LOC_Os09g16710
OsAffx.17746.1.S1_at--1129--1791Chr09:10223533..10223557 (25 bp)
ACCCGACCGCCGATGTGGAGGCAGC
LOC_Os09g16710
OsAffx.17746.1.S1_at--485--8531Chr09:10223493..10223517 (25 bp)
TGGACAGGGCGAGCGTGAGTCTCCA
LOC_Os09g16710
Target Sequence 
AGTCGATGGCGGTGCGTGGAGTCAAGGTGGTGGTGGAGTCGAGGGTTTTGGAGGCAGCGCGGATGGAGTGGAGTGCAACG
GCTGAGTGCGGAGGAGTCAACGTCGCAAAGGGGTGGAGCGCGTGGTGCGGCGGCGGTGGCACATAAGGGTGAAGCACTAG
AGGAGGCGGCGGAGGAGGTGGGGAAGATGATGGAATCAACTGCAGCGATGGGAAGGCGTTGGGCGGAGGAGGAACCAGCG
TGCGGCGGCGTGCAGGTGGAGATGACGCGGATGAGGAATCGGTGTAGATGTGGCAACGACGACAATAGTGTGGATGGATG
CGACGCTCCTCGTCGGGCTCGTGGCACCTGGGTGGTGGCGTGGATGGAAACGGCGCTCCGCGTCGAGCTCAAGGCAGAGA
GAGAGGGAAGTGAGGGGAAGAGCGGCGTCGGCGGCGGCATCCCTTCACGCGGAGGCGACAGAGCGAAGGATATGGAAGCT
AGGGAGCATGATGACCCGACCGCCGATGTGGAGGCAGCGGATCGGAGAGGATGTGGACAGGGCGAGCGTGAGTCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis