Browse Element(s) Details


Os.53888.1.S1_at

Description gb:AK100630.1
DB_XREF= gi:32985839
TID=Os.53888.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53888 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023109D15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023109D15, full insert sequence.
FL= gb:AK100630.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4423011/11ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44190Os.13464.1.S1_at11/117+26405007..26407105H/ACA ribonucleoprotein complex subunit 4, putative, expressed
LOC_Os07g44200Os.52622.1.S1_at11/117+26411195..26412764DNA-binding storekeeper protein, putative, expressed
LOC_Os07g44210Os.23232.1.S1_at11/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44210OsAffx.6305.1.S1_at2/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44210OsAffx.15286.1.S1_at2/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44220OsAffx.28898.1.S1_at11/117+26429266..26429583hypothetical protein
LOC_Os07g44230Os.53888.1.S1_at11/117+26431006..26433562ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed
LOC_Os07g44240Os.14919.1.S1_at4/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44240OsAffx.29313.1.S1_at1/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44240Os.56216.1.S1_at1/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44250Os.12381.1.S1_s_at11/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44250Os.12381.1.S1_x_at11/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44250Os.43269.1.S1_x_at7/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44260OsAffx.5632.1.S1_x_at1/117+26448311..26448775Dirigent-like protein
LOC_Os07g44260OsAffx.5632.1.S1_at1/117+26448311..26448775Dirigent-like protein
LOC_Os07g44280OsAffx.16709.2.S1_s_at11/117+26455105..26455854Dirigent-like protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004526molecular_functionribonuclease P activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53888.1.S1_at--423--5371Chr07:26432969..26432993 (25 bp)
GAAGACTGCTAATCTGGTTGCCAAG
LOC_Os07g44230
Os.53888.1.S1_at--108--5451Chr07:26432994..26433018 (25 bp)
GAACCGTAACTGAGCTTCTGGTCCA
LOC_Os07g44230
Os.53888.1.S1_at--916--1551Chr07:26433006..26433030 (25 bp)
AGCTTCTGGTCCAATCTCAGTGACA
LOC_Os07g44230
Os.53888.1.S1_at--695--4811Chr07:26433064..26433088 (25 bp)
GCTCTGCCTCATTCCACTAATAAAG
LOC_Os07g44230
Os.53888.1.S1_at--31--7731Chr07:26433132..26433156 (25 bp)
GGTGAATTTTGGACCTCTGGGTGCT
LOC_Os07g44230
Os.53888.1.S1_at--1037--6331Chr07:26433236..26433260 (25 bp)
GATGCTGCTGAACTGTGGCGTTTAC
LOC_Os07g44230
Os.53888.1.S1_at--906--1431Chr07:26433267..26433291 (25 bp)
AGAACTTTTTCTGCCTGTATTCATG
LOC_Os07g44230
Os.53888.1.S1_at--990--1271Chr07:26433293..26433317 (25 bp)
AGATCAGGCCAGACCAGGCTTGTTT
LOC_Os07g44230
Os.53888.1.S1_at--636--1491Chr07:26433365..26433389 (25 bp)
AGCAAAGTTGCTCGCCTAGACTGTA
LOC_Os07g44230
Os.53888.1.S1_at--215--6932Chr07:26436213..26436237 (25 bp)
GTATGTGTCCACTATGTATAATGCC
NONE
Os.53888.1.S1_at--123--1692Chr07:26433446..26433470 (25 bp)
AGCCTTGTGGATATCTGCCTTATGT
LOC_Os07g44230
Target Sequence 
GAAGACTGCTAATCTGGTTGCCAAGGAACCGTAACTGAGCTTCTGGTCCAATCTCAGTGACATAATGGGCGAATTTATTT
TTAAACAAGGCAGAAGCTCTGCCTCATTCCACTAATAAAGAATAGATATTGACCCAAGAAAATGTTTGCACCAAAAACTG
ATAGGTGAATTTTGGACCTCTGGGTGCTCAGCATTGCAGTAGCATCTTGACAGGAAGTCATGAGGATGAATGGGCATGCA
GTTGAGAATTTCGCGAAGGAAATCAAGGATGCTGCTGAACTGTGGCGTTTACATCTGAAGAACTTTTTCTGCCTGTATTC
ATGAAGATCAGGCCAGACCAGGCTTGTTTGTTAGGTAGGTTCATTCTGTTTAGTTGAATTTGTGGATCATAGAGCTAGCA
AAGTTGCTCGCCTAGACTGTAGGCTATATTATGAGCAATTTAGTGCGTATGTGTCCACTATGTATAATGCCATTTGCAGC
CTTGTGGATATCTGCCTTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis