Browse Element(s) Details


Os.55690.1.S1_at

Description gb:AK108571.1
DB_XREF= gi:32993780
TID=Os.55690.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55690 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-E08, full insert sequence.
FL= gb:AK108571.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4744711/11Disease resistance protein RPP8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47444Os.35344.3.S1_x_at9/1111+28074396..28080488Transposable element protein, putative, MuDR
LOC_Os11g47444Os.35344.18.S1_x_at7/1111+28074396..28080488Transposable element protein, putative, MuDR
LOC_Os11g47444OsAffx.22940.5.S1_x_at3/1111+28074396..28080488Transposable element protein, putative, MuDR
LOC_Os11g47445OsAffx.18924.2.S1_x_at8/1111+28083491..28086431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47445OsAffx.18924.4.S1_at3/1111+28083491..28086431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47445OsAffx.19842.1.S1_at2/1111+28083491..28086431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47446OsAffx.19421.2.S1_at11/1111+28088270..28092704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47446OsAffx.28898.1.S1_at2/1111+28088270..28092704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47446OsAffx.31287.1.S1_at1/1111+28088270..28092704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47446OsAffx.3348.1.S1_at1/1111+28088270..28092704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47446OsAffx.20497.1.S1_at1/1111+28088270..28092704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47446OsAffx.22387.1.S1_at1/1111+28088270..28092704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47447Os.55690.1.S1_at11/1111+28095508..28097914Disease resistance protein RPP8, putative, expressed
LOC_Os11g47448OsAffx.31070.2.S1_at1/1111+28104505..28106482hypothetical protein
LOC_Os11g47449OsAffx.13772.1.S1_x_at1/1111+28109841..28110805hypothetical protein
LOC_Os11g47449OsAffx.13772.1.S1_at1/1111+28109841..28110805hypothetical protein
LOC_Os11g47451NANA11+28111713..28114492retrotransposon protein, putative, unclassified
LOC_Os11g47452NANA11+28115807..28117951retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55690.1.S1_at--510--1311Chr11:28097216..28097240 (25 bp)
AGATGTCCAGGATCTACACACTCTT
LOC_Os11g47447
Os.55690.1.S1_at--528--6691Chr11:28097260..28097284 (25 bp)
GTTGCCTCTACATATCTAGCGGTAT
LOC_Os11g47447
Os.55690.1.S1_at--1122--9991Chr11:28097276..28097300 (25 bp)
TAGCGGTATTCTGCTATCCTACGTC
LOC_Os11g47447
Os.55690.1.S1_at--226--8291Chr11:28097335..28097359 (25 bp)
GGCATTGCACGACCAACTTAGAGTT
LOC_Os11g47447
Os.55690.1.S1_at--680--10691Chr11:28097389..28097413 (25 bp)
TTGCGCACCTCGAGTTCAGGGTCAG
LOC_Os11g47447
Os.55690.1.S1_at--932--5471Chr11:28097478..28097502 (25 bp)
GAACTTGTTACGCTGTACTTGCAAT
LOC_Os11g47447
Os.55690.1.S1_at--1125--7011Chr11:28097492..28097516 (25 bp)
GTACTTGCAATGCTCTGGTGCCAGC
LOC_Os11g47447
Os.55690.1.S1_at--905--911Chr11:28097550..28097574 (25 bp)
AGGCATGAGGTCCATGTTCATCCCA
LOC_Os11g47447
Os.55690.1.S1_at--124--5231Chr11:28097598..28097621 (24 bp)
GAATACCATTGCCAAAGCCAACAGC
LOC_Os11g47447
Os.55690.1.S1_at--373--1691Chr11:28097613..28097742 (25 bp)
AGCCAACAGCCCGAAGATGATGACA
LOC_Os11g47447
Os.55690.1.S1_at--1058--1171Chr11:28097800..28097824 (25 bp)
AGTACTGTACATAGCCTGCATTTGT
LOC_Os11g47447
Target Sequence 
AGATGTCCAGGATCTACACACTCTTGGGAGGTTGCCAGCGCTTCGTTGCCTCTACATATCTAGCGGTATTCTGCTATCCT
ACGTCGTCGCCGGTGGAGATGGATTGTTTCAAAATCTAAGGCATTGCACGACCAACTTAGAGTTCATGTTTCAACAGGGA
GCAATGCCGATGCTTGCGCACCTCGAGTTCAGGGTCAGTGTGCTGGGCCTGGGCAGGAGGGAGGACCCTGCAGGCTTGGG
GTTGGGGCACCTTCCTTTCCTTGAACTTGTTACGCTGTACTTGCAATGCTCTGGTGCCAGCATTGTGGAGGTTGCGGAAG
TGAAGGTAATGCTGAGGCATGAGGTCCATGTTCATCCCAACCATCCTACCCTTAATTTGGAAGAATACCATTGCCAAAGC
CAACAGCCCGAAGATGATGACAGCGGTGGATCCGTATAAAAATATTTACTAGTCAATGGACTGGGCGAGACCAGTGACCA
GTACTGTACATAGCCTGCATTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55690.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis