Browse Element(s) Details


Os.23212.1.S1_at

Description gb:AK103026.1
DB_XREF= gi:32988235
TID=Os.23212.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033117B13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117B13, full insert sequence.
FL= gb:AK103026.1 gb:AK059245.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4409011/11leucine-rich repeat family protein, putative, expressed
LOC_Os07g290602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44040Os.27105.1.S1_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44040Os.27105.1.S2_s_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44040Os.9552.1.S1_s_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44050Os.53424.1.S1_at10/1112+27282857..27283690expressed protein
LOC_Os12g44060Os.9556.1.S1_at11/1112+27291162..27293894nodulin family protein, putative, expressed
LOC_Os12g44060Os.9556.1.S2_at11/1112+27291162..27293894nodulin family protein, putative, expressed
LOC_Os12g44070Os.56205.1.S1_at11/1112+27296483..27298336nodulin family protein, putative, expressed
LOC_Os12g44080OsAffx.32183.1.S1_at11/1112+27302494..27304149CHCH domain containing protein, expressed
LOC_Os12g44080OsAffx.32183.1.S1_s_at11/1112+27302494..27304149CHCH domain containing protein, expressed
LOC_Os12g44090Os.23212.1.S1_at11/1112+27306635..27310516leucine-rich repeat family protein, putative, expressed
LOC_Os12g44100Os.52621.1.S1_x_at11/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44100Os.52621.1.S1_at11/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44100Os.51071.1.A1_x_at11/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44100Os.51071.1.A1_at10/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44110Os.52570.1.S1_at11/1112+27325869..27327854expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005886cellular_componentplasma membrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23212.1.S1_at--1046--1111Chr12:27307256..27307280 (25 bp)
AGTGCTTTTGCTCGAGTTGGTGACC
LOC_Os12g44090
Os.23212.1.S1_at--1160--1311Chr12:27307227..27307251 (25 bp)
AGAGGCCTACAGATGCATGCTTCCT
LOC_Os12g44090
Os.23212.1.S1_at--310--5731Chr12:27307109..27307218 (25 bp)
GACTGAACATTGTTGGCTGGCTCAA
LOC_Os12g44090
Os.23212.1.S1_at--1150--8911Chr12:27306950..27306974 (25 bp)
TGAGCGCTGTCCTGAAGATGCTGGA
LOC_Os12g44090
Os.23212.1.S1_at--965--6111Chr12:27306866..27306890 (25 bp)
GAGTGAGTACCTCCTATAATGGTTG
LOC_Os12g44090
Os.23212.1.S1_at--569--2971Chr12:27306849..27306873 (25 bp)
AATGGTTGCTACTACTCATGATTGC
LOC_Os12g44090
Os.23212.1.S1_at--550--8151Chr12:27306767..27306791 (25 bp)
GGACAAGTGCAGCTTCACATCTTCT
LOC_Os12g44090
Os.23212.1.S1_at--690--3071Chr12:27306707..27306731 (25 bp)
AATCACTGTGGTGGTCTGTACATAG
LOC_Os12g44090
Os.23212.1.S1_at--574--2071Chr12:27306688..27306712 (25 bp)
ACATAGTGGAGACCTTCTGTTCATC
LOC_Os12g44090
Os.23212.1.S1_at--658--9592Chr12:27306653..27306677 (25 bp)
TCATTTATCTGTCTGGCTGCTGCAA
LOC_Os12g44090
Os.23212.1.S1_at--303--4772Chr12:27306638..27306662 (25 bp)
GCTGCTGCAAATCCACTTAAACCAA
LOC_Os12g44090
Target Sequence 
AGTGCTTTTGCTCGAGTTGGTGACCGGAAAGAGGCCTACAGATGCATGCTTCCTCAAGAAGGGACTGAACATTGTTGGCT
GGCTCAACACCCTGACGGGGGAGCATCGGCTGGAGGAGATCATTGATGAGAACTGCGGNGATGTGGAAGTGGAAGCAGTC
GAGGCGATCCTCGACATTGNTGCGATGTGCACCGATGCAGACCCAGGCCAGCGTCCATCNATGAGCGCTGTCCTGAAGAT
GCTGGAGGAGGAGATCCTGTCNCCCTGCATGAGTGAGCTCTACTACGAGCAGCACCTGGAACTNTGAGTGAGTACCTCCT
ATAATGGTTGCTACTACTCATGATTGCAGTGACAAGCAACAAATTTTGTAGATACATGATGATGAACCGTGTAGGAGTGT
AGCTGGACAAGTGCAGCTTCACATCTTCTTCTTTTGTGCCCANCTGGTTCTTTGGGCAGAACCAAATCACTGTGGTGGTC
TGTACATAGTGGAGACCTTCTGTTCATCTTTTTTTTTCTCATTTATCTGTCTGGCTGCTGCAAATCCACTTAAACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis