Browse Element(s) Details


Os.27105.1.S1_at

Description gb:AK108433.1
DB_XREF= gi:32993642
TID=Os.27105.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27105 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-B02, full insert sequence.
FL= gb:AK108433.1 gb:AK072376.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4404011/11transposase protein, putative, expressed
LOC_Os11g263501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43970Os.54768.1.S1_at10/1112+27252953..27255061hydrolase, alpha/beta fold family protein, expressed
LOC_Os12g43980Os.43567.1.S1_x_at8/1112+27255789..27258283transposon protein, putative, unclassified, expressed
LOC_Os12g43980Os.38172.1.S1_x_at4/1112+27255789..27258283transposon protein, putative, unclassified, expressed
LOC_Os12g43990Os.57165.1.S1_at11/1112+27260197..27261033expressed protein
LOC_Os12g44000Os.12316.1.S1_at10/1112+27261833..27265116Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os12g44010OsAffx.20111.1.S1_at11/1112+27267698..27269080expressed protein
LOC_Os12g44020Os.15738.1.S1_at11/1112+27270290..27273545expressed protein
LOC_Os12g44020OsAffx.9512.1.S1_x_at3/1112+27270290..27273545expressed protein
LOC_Os12g44030OsAffx.9512.1.S1_x_at1/1112+27276298..27277590expressed protein
LOC_Os12g44040Os.27105.1.S1_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44040Os.27105.1.S2_s_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44040Os.9552.1.S1_s_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44050Os.53424.1.S1_at10/1112+27282857..27283690expressed protein
LOC_Os12g44060Os.9556.1.S1_at11/1112+27291162..27293894nodulin family protein, putative, expressed
LOC_Os12g44060Os.9556.1.S2_at11/1112+27291162..27293894nodulin family protein, putative, expressed
LOC_Os12g44070Os.56205.1.S1_at11/1112+27296483..27298336nodulin family protein, putative, expressed
LOC_Os12g44080OsAffx.32183.1.S1_at11/1112+27302494..27304149CHCH domain containing protein, expressed
LOC_Os12g44080OsAffx.32183.1.S1_s_at11/1112+27302494..27304149CHCH domain containing protein, expressed
LOC_Os12g44090Os.23212.1.S1_at11/1112+27306635..27310516leucine-rich repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27105.1.S1_at--18--6372Chr12:27279826..27279850 (25 bp)
GATCCAAGCGAGGTGCCTGGCTAGA
LOC_Os12g44040
Os.27105.1.S1_at--830--1032Chr12:27279836..27279860 (25 bp)
AGGTGCCTGGCTAGAGGCGCCACAT
LOC_Os12g44040
Os.27105.1.S1_at--850--5332Chr12:27279889..27279913 (25 bp)
GAAGACGAGGGTTCAGTCAACGCAT
LOC_Os12g44040
Os.27105.1.S1_at--521--7092Chr12:27279904..27279928 (25 bp)
GTCAACGCATGAGAGAGCCACTACA
LOC_Os12g44040
Os.27105.1.S1_at--1132--5852Chr12:27279918..27279942 (25 bp)
GAGCCACTACAATGGAAGGATGCGA
LOC_Os12g44040
Os.27105.1.S1_at--195--4692Chr12:27279984..27280008 (25 bp)
GCGGAGCCGGAGGATGTCGCTTGCT
LOC_Os12g44040
Os.27105.1.S1_at--1046--9372Chr12:27280068..27280092 (25 bp)
TCGATGGAAGCCGAGCGCAGCGCTG
LOC_Os12g44040
Os.27105.1.S1_at--2--3812Chr12:27280090..27280114 (25 bp)
CTGCCGTTGACGGAAGCCGGGTGTA
LOC_Os12g44040
Os.27105.1.S1_at--366--4252Chr12:27280106..27280130 (25 bp)
CCGGGTGTATCGTCGGATGCCGAAT
LOC_Os12g44040
Os.27105.1.S1_at--611--7432Chr12:27280110..27280134 (25 bp)
GTGTATCGTCGGATGCCGAATATGC
LOC_Os12g44040
Os.27105.1.S1_at--40--1392Chr12:27280301..27280325 (25 bp)
AGACTGGAAGACATGATTTATTTTT
LOC_Os12g44040
Target Sequence 
GATCCAAGCGAGGTGCCTGGCTAGAGGCGCCACATCCGCCGGGGAAGACGAGGGTTCGCTGGGGAAGACGAGGGTTCAGT
CAACGCATGAGAGAGCCACTACAATGGAAGGATGCGAGGGTACACAGGGTCGGCTTCGGCCCCGGCGTCGACGAGGAAGC
GGAGCCGGAGGATGTCGCTTGCTGCAGATGGGGGGGNTCGGCCGCGGCGCCATCGATGGAAGTTGNACGCAGCGCCGCCG
CCGTCGATGGAAGCCGAGCGCAGCGCTGCCGTTGACGGAAGCCGGGTGTATCGTCGGATGCCGAATATGCCGCGTCGCGC
CGCTGCCGCCGCCGCCGCTGGGCGTAGCACTGCCTCCACCGCCGGACGCCCTATGCCATCGCCACCACACTACCACGTAG
GCCAGGGCACAAAGCTGCCATCCAATGGGTTGTGGAGGTAATTAAATTGAGTTATTGGAGAAGATAGAGAGAAATCAGAC
TGGAAGACATGATTTATTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis