Browse Element(s) Details


OsAffx.9512.1.S1_x_at

Description gb:NM_190831.1
DB_XREF= gi:34908745
GEN=P0415A04.5
TID=OsAffx.9512.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) purple acid phosphatase-like protein (P0415A04.5), mRNA.
PROD=purple acid phosphatase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5767011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g440203/11expressed protein
LOC_Os12g440301/11expressed protein
LOC_Os12g055401/11Ser/Thr protein phosphatase family protein, expressed
LOC_Os11g054101/11calcineurin-like phosphoesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57630Os.22276.1.S1_a_at11/111+33644887..33649756pentatricopeptide, putative, expressed
LOC_Os01g57650Os.37921.2.S1_at11/111+33656401..33658783zinc finger family protein, putative, expressed
LOC_Os01g57660OsAffx.23827.1.S1_x_at11/111+33668491..33668869hypothetical protein
LOC_Os01g57660OsAffx.23827.1.S1_at11/111+33668491..33668869hypothetical protein
LOC_Os01g57670OsAffx.9512.1.S1_x_at11/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.9512.1.S1_at10/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.8455.1.S1_at2/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.12338.1.S1_at1/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57680NANA1+33674791..33675153hypothetical protein
LOC_Os01g57690OsAffx.9390.1.S1_at11/111+33677093..33677974Plastocyanin-like domain containing protein, expressed
LOC_Os01g57700OsAffx.23829.1.S1_at4/111+33686340..33688642expressed protein
LOC_Os01g57710Os.38205.1.S1_at11/111+33691225..33694212expressed protein
LOC_Os01g57720Os.22812.1.S1_a_at11/111+33695829..33701469expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016036biological_processcellular response to phosphate starvation
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9512.1.S1_x_at--444--5411Chr01:33673345..33673466 (25 bp)
GAAGCCCTTCTGGTACTCCGAGGAG
LOC_Os01g57670
OsAffx.9512.1.S1_x_at--75--1671Chr01:33673347..33673471 (25 bp)
AGCCCTTCTGGTACTCCGAGGAGCT
LOC_Os01g57670
OsAffx.9512.1.S1_x_at--390--10611Chr01:33673352..33673476 (25 bp)
TTCTGGTACTCCGAGGAGCTTGCCA
LOC_Os01g57670
OsAffx.9512.1.S1_x_at--11--6191Chr01:33673464..33673488 (25 bp)
GAGGAGCTTGCCACCCGCATCGTGC
LOC_Os01g57670
OsAffx.9512.1.S1_x_at--313--512Chr01:33673482..33673506 (25 bp)
ATCGTGCTCATGCACTCGCCGTGGT
LOC_Os01g57670
OsAffx.9512.1.S1_x_at--1058--4155Chr12:2537305..2537325 (21 bp)
CGCCGTGGTACAACAGCAACAACTA
LOC_Os12g05540
OsAffx.9512.1.S1_x_at--718--2472Chr01:33673509..33673533 (25 bp)
AACAGCAACAACTACCACTACATGG
LOC_Os01g57670
OsAffx.9512.1.S1_x_at--201--711Chr01:33673542..33673566 (25 bp)
ATGATGCGTGTCCAGTTCGAGCGGT
LOC_Os01g57670
OsAffx.9512.1.S1_x_at--639--1631Chr01:33673561..33673585 (25 bp)
AGCGGTGGCTCGTCGACACCAAGGT
LOC_Os01g57670
OsAffx.9512.1.S1_x_at--1146--4071Chr01:33673619..33673643 (25 bp)
CGAGCGAAGCCGCAGGTTCGCCAAC
LOC_Os01g57670
OsAffx.9512.1.S1_x_at--1063--5411Chr01:33673624..33673648 (25 bp)
GAAGCCGCAGGTTCGCCAACATCAA
LOC_Os01g57670
Target Sequence 
GAAGCCCTTCTGGTACTCCGAGGAGCTTGCCACCCGCATCGTGCTCATGCACTCGCCGTGGTACAACAGCAACAACTACC
ACTACATGGAGGGGGAGATGATGCGTGTCCAGTTCGAGCGGTGGCTCGTCGACACCAAGGTGGACCTGGTGCTCGCCGCC
CACGTCCACTCGTACGAGCGAAGCCGCAGGTTCGCCAACATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9512.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis