Browse Element(s) Details


Os.22812.1.S1_a_at

Description gb:AK101857.1
DB_XREF= gi:32987066
TID=Os.22812.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.22812 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0415A04.11 (P0415A04.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033069O17, full insert sequence.
FL= gb:AK101857.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5772011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57670OsAffx.9512.1.S1_x_at11/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.9512.1.S1_at10/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.8455.1.S1_at2/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.12338.1.S1_at1/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57680NANA1+33674791..33675153hypothetical protein
LOC_Os01g57690OsAffx.9390.1.S1_at11/111+33677093..33677974Plastocyanin-like domain containing protein, expressed
LOC_Os01g57700OsAffx.23829.1.S1_at4/111+33686340..33688642expressed protein
LOC_Os01g57710Os.38205.1.S1_at11/111+33691225..33694212expressed protein
LOC_Os01g57720Os.22812.1.S1_a_at11/111+33695829..33701469expressed protein
LOC_Os01g57730Os.49540.1.A1_x_at11/111+33709276..33711335Peroxidase family protein, expressed
LOC_Os01g57730Os.33106.1.S1_at10/111+33709276..33711335Peroxidase family protein, expressed
LOC_Os01g57740Os.9788.1.S1_x_at10/111+33719258..33722684expressed protein
LOC_Os01g57750OsAffx.21698.1.S1_at11/111+33723652..33724561hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042594biological_processresponse to starvation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22812.1.S1_a_at--799--3291Chr01:33696670..33696694 (25 bp)
CAAATATGGATTGCTTCAGCGTCAA
LOC_Os01g57720
Os.22812.1.S1_a_at--1003--4891Chr01:33696658..33696682 (25 bp)
GCTTCAGCGTCAAAAGTCCGGATTT
LOC_Os01g57720
Os.22812.1.S1_a_at--488--1331Chr01:33696631..33696655 (25 bp)
AGAGGACGGTAGACTCTCCTGCAGA
LOC_Os01g57720
Os.22812.1.S1_a_at--885--5691Chr01:33696620..33696644 (25 bp)
GACTCTCCTGCAGAAGCAGTTCTAG
LOC_Os01g57720
Os.22812.1.S1_a_at--735--1451Chr01:33696609..33696633 (25 bp)
AGAAGCAGTTCTAGCTCTTTGGACT
LOC_Os01g57720
Os.22812.1.S1_a_at--157--1591Chr01:33696597..33696621 (25 bp)
AGCTCTTTGGACTGCATGTCTGAAG
LOC_Os01g57720
Os.22812.1.S1_a_at--669--5291Chr01:33696576..33696600 (25 bp)
GAAGGCCCAATTAGCACTGATGATA
LOC_Os01g57720
Os.22812.1.S1_a_at--866--4211Chr01:33696484..33696508 (25 bp)
CCGTTCCGAGCTTGTAAATAATACT
LOC_Os01g57720
Os.22812.1.S1_a_at--951--1371Chr01:33696458..33696482 (25 bp)
AGAGCCTTAACACAGAGGCCCAGCT
LOC_Os01g57720
Os.22812.1.S1_a_at--870--891Chr01:33696443..33696467 (25 bp)
AGGCCCAGCTCGGATTTGTAAATAA
LOC_Os01g57720
Os.22812.1.S1_a_at--1044--2091Chr01:33696401..33696425 (25 bp)
ACAGAGAGCAACTCCCAGATTTGTG
LOC_Os01g57720
Target Sequence 
CAAATATGGATTGCTTCAGCGTCAAAAGTCCGGATTTTCAGAGGACGGTAGACTCTCCTGCAGAAGCAGTTCTAGCTCTT
TGGACTGCATGTCTGAAGGCCCAATTAGCACTGATGATAATGGTTTTGGTCAATGTTTAGTAGAAGATAGTGGTGGTGCT
GTAAATAAGAACCCAAATGTTAACCCCCGTTCCGAGCTTGTAAATAATACTCAGAGCCTTAACACAGAGGCCCAGCTCGG
ATTTGTAAATAACAAAGAGGATTGTGAAGACAGAGAGCAACTCCCAGATTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22812.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis