Browse Element(s) Details


Os.9788.1.S1_x_at

Description gb:AK061223.1
DB_XREF= gi:32971241
TID=Os.9788.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9788 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0415A04.14 (P0415A04.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-F09, full insert sequence.
FL= gb:AK061223.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5774010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57720Os.22812.1.S1_a_at11/111+33695829..33701469expressed protein
LOC_Os01g57730Os.49540.1.A1_x_at11/111+33709276..33711335Peroxidase family protein, expressed
LOC_Os01g57730Os.33106.1.S1_at10/111+33709276..33711335Peroxidase family protein, expressed
LOC_Os01g57740Os.9788.1.S1_x_at10/111+33719258..33722684expressed protein
LOC_Os01g57750OsAffx.21698.1.S1_at11/111+33723652..33724561hypothetical protein
LOC_Os01g57760OsAffx.21697.1.S1_at11/111+33731081..33732063retrotransposon protein, putative, unclassified
LOC_Os01g57770Os.6638.1.S1_x_at11/111+33736503..33742423hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g57770Os.46747.1.S1_at11/111+33736503..33742423hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g57770Os.6638.1.S1_at9/111+33736503..33742423hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g57770Os.55355.1.S1_x_at2/111+33736503..33742423hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g57780NANA1+33743993..33747210retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9788.1.S1_x_at--37--2751Chr01:33719803..33719827 (25 bp)
AAGAAGATGGAGTCCTCCTTCGCTG
LOC_Os01g57740
Os.9788.1.S1_x_at--398--1331Chr01:33719846..33719870 (25 bp)
AGAGGAGCGGAGACGCCAATCCTTC
LOC_Os01g57740
Os.9788.1.S1_x_at--335--9971Chr01:33720909..33720930 (22 bp)
TACCACAGGTGTGTTGGCCGTGTAT
LOC_Os01g57740
Os.9788.1.S1_x_at--786--4471Chr01:33720945..33720969 (25 bp)
GCCTGTGCACGTTGATGGTAGCCCA
LOC_Os01g57740
Os.9788.1.S1_x_at--1004--7791Chr01:33720961..33720985 (25 bp)
GGTAGCCCAAAGGAGCAGTTCCACC
LOC_Os01g57740
Os.9788.1.S1_x_at--864--4071Chr01:33721018..33721042 (25 bp)
CGACGAACAGGCAGACGGGTCCCAG
LOC_Os01g57740
Os.9788.1.S1_x_at--354--6191Chr01:33721056..33721080 (25 bp)
GAGGAAGATCCTTTTTGCCTTCGCA
LOC_Os01g57740
Os.9788.1.S1_x_at--334--3411NONE
CAGCACTGTCTAGTGTGGGCACGTT
NONE
Os.9788.1.S1_x_at--425--8651Chr01:33722216..33722240 (25 bp)
TGGGCACGTTGATCTTGCTCTACTT
LOC_Os01g57740
Os.9788.1.S1_x_at--954--1111Chr01:33722285..33722309 (25 bp)
AGTGATGCCATCTGACCGCACAGTT
LOC_Os01g57740
Os.9788.1.S1_x_at--78--5831Chr01:33722298..33722322 (25 bp)
GACCGCACAGTTTATCACTTTTCAT
LOC_Os01g57740
Target Sequence 
AAGAAGATGGAGTCCTCCTTCGCTGGGAAGGGCCTCGAGCGGGAGAGGAGCGGAGACGCCAATCCTTCTACCACAGGTGT
GTTGGCCGTGTATGAGAAGCAGGTGGTGCCTGTGCACGTTGATGGTAGCCCAAAGGAGCAGTTCCACCCTTCAACACCAA
CAGCTGGTGGGGCAAAGCGCCGACGAACAGGCAGACGGGTCCCAGGGTGGCGTGACCCGAGGAAGATCCTTTTTGCCTTC
GCAGCACTGTCTAGTGTGGGCACGTTGATCTTGCTCTACTTCACACTCTCAATGGGGAGGATGACAGGAGGTCAGGCTGA
TGGCCAGTGATGCCATCTGACCGCACAGTTTATCACTTTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9788.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis