Browse Element(s) Details


Os.49540.1.A1_x_at

Description gb:AK109348.2
DB_XREF= gi:42821665
TID=Os.49540.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49540 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-204-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-204-A09, full insert sequence.
FL= gb:AK109348.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5773011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57700OsAffx.23829.1.S1_at4/111+33686340..33688642expressed protein
LOC_Os01g57710Os.38205.1.S1_at11/111+33691225..33694212expressed protein
LOC_Os01g57720Os.22812.1.S1_a_at11/111+33695829..33701469expressed protein
LOC_Os01g57730Os.49540.1.A1_x_at11/111+33709276..33711335Peroxidase family protein, expressed
LOC_Os01g57730Os.33106.1.S1_at10/111+33709276..33711335Peroxidase family protein, expressed
LOC_Os01g57740Os.9788.1.S1_x_at10/111+33719258..33722684expressed protein
LOC_Os01g57750OsAffx.21698.1.S1_at11/111+33723652..33724561hypothetical protein
LOC_Os01g57760OsAffx.21697.1.S1_at11/111+33731081..33732063retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49540.1.A1_x_at--839--5811Chr01:33709862..33709886 (25 bp)
GACCCTTTCGACAAGACGTACGTGG
LOC_Os01g57730
Os.49540.1.A1_x_at--124--2771Chr01:33709850..33709874 (25 bp)
AAGACGTACGTGGACATGGACCCGG
LOC_Os01g57730
Os.49540.1.A1_x_at--605--7031Chr01:33709818..33709842 (25 bp)
GTACACGTTCGACCTGAGCTACTAC
LOC_Os01g57730
Os.49540.1.A1_x_at--502--1571Chr01:33709802..33709826 (25 bp)
AGCTACTACCGGGACGTGTACAGAA
LOC_Os01g57730
Os.49540.1.A1_x_at--620--891Chr01:33709753..33709777 (25 bp)
AGGCCCTCCTCAATGACAAGTGGAC
LOC_Os01g57730
Os.49540.1.A1_x_at--824--9131Chr01:33709598..33709622 (25 bp)
TGCGGCGCGTACGTTGACTAGGCAA
LOC_Os01g57730
Os.49540.1.A1_x_at--398--9131Chr01:33709537..33709561 (25 bp)
TGCGAGTTGGCGCAATCGCTTCGAT
LOC_Os01g57730
Os.49540.1.A1_x_at--938--9731Chr01:33709509..33709533 (25 bp)
TCAATCGTCATGTGGCCGTGGCAAA
LOC_Os01g57730
Os.49540.1.A1_x_at--390--1711Chr01:33709469..33709493 (25 bp)
ACCACAGTGGAGTTGCGTTATTATT
LOC_Os01g57730
Os.49540.1.A1_x_at--689--4531Chr01:33709404..33709428 (25 bp)
GCCCGCTGAAATTTTCTCACAACTG
LOC_Os01g57730
Os.49540.1.A1_x_at--560--1811Chr01:33709316..33709340 (25 bp)
ACCCTGTTCTTCACGGTATGGCATG
LOC_Os01g57730
Target Sequence 
GACCCTTTCGACAAGACGTACGTGGACATGGACCCGGGGAGCCCGTACACGTTCGACCTGAGCTACTACCGGGACGTGTA
CAGAAACAGGGGCCTCTTCGTCTCCGACCAGGCCCTCCTCAATGACAAGTGGACCAANCAGTACGTGNANAGNATGNCGT
CCGCGNATNCNACGGACGAGTACTTCAGGNACTACGCGNAGNCCATGACCNAACATGGGGAGNATCGAGGTGCTCACCGN
CGACAACGGCGAGATCAGGAAGGTGTGCGGCGCGTACGTTGACTAGGCAAGGGGGAGTAGACGGANCCAGCGCGCGGTTC
GTTGGGTGCGAGTTGGCGCAATCGCTTCGATNGATCAATCGTCATGTGGCCGTGGCAAACGTGGGGGCTAGCCAACCACA
GTGGAGTTGCGTTATTATTCTATATATCGGTCGAGGTGGTTGGGGCGTTGACGCTCACCGCCCGCTGAAATTTTCTCACA
ACTGGAAAGAAAAACTGTAGGTATATCAACACATAGAATAGTCCTTCTCTCTTTTTTTTCTTCGTTCACCCTGTTCTTCA
CGGTATGGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49540.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis