Browse Element(s) Details


OsAffx.23829.1.S1_at

Description gb:NM_190834.1
DB_XREF= gi:34908751
GEN=P0415A04.9
TID=OsAffx.23829.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0415A04.9 (P0415A04.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g577004/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57660OsAffx.23827.1.S1_x_at11/111+33668491..33668869hypothetical protein
LOC_Os01g57660OsAffx.23827.1.S1_at11/111+33668491..33668869hypothetical protein
LOC_Os01g57670OsAffx.9512.1.S1_x_at11/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.9512.1.S1_at10/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.8455.1.S1_at2/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.12338.1.S1_at1/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57680NANA1+33674791..33675153hypothetical protein
LOC_Os01g57690OsAffx.9390.1.S1_at11/111+33677093..33677974Plastocyanin-like domain containing protein, expressed
LOC_Os01g57700OsAffx.23829.1.S1_at4/111+33686340..33688642expressed protein
LOC_Os01g57710Os.38205.1.S1_at11/111+33691225..33694212expressed protein
LOC_Os01g57720Os.22812.1.S1_a_at11/111+33695829..33701469expressed protein
LOC_Os01g57730Os.49540.1.A1_x_at11/111+33709276..33711335Peroxidase family protein, expressed
LOC_Os01g57730Os.33106.1.S1_at10/111+33709276..33711335Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23829.1.S1_at--828--7351Chr01:33686691..33686715 (25 bp)
GTGACCGCGTTGGTTTACGCCATCA
LOC_Os01g57700
OsAffx.23829.1.S1_at--155--2851Chr01:33686613..33686637 (25 bp)
AAGTCAGGGAGGGTCTCGCTCATAG
LOC_Os01g57700
OsAffx.23829.1.S1_at--883--9331Chr01:33686598..33686622 (25 bp)
TCGCTCATAGTGTTCATGGTCGCCG
LOC_Os01g57700
OsAffx.23829.1.S1_at--129--7211Chr01:33686556..33686580 (25 bp)
GTCGTCGTGATAGCTTGCTCCGGAG
LOC_Os01g57700
OsAffx.23829.1.S1_at--23--2732Chr04:29837181..29837205 (25 bp)
AAGCACTACAACTTTTCGTCACCAA
NONE
OsAffx.23829.1.S1_at--238--2354Chr02:10404663..10404686 (24 bp)
AAAGCAAACTCTAGCCGGAATGGAT
NONE
OsAffx.23829.1.S1_at--382--8214Chr02:10404678..10404702 (25 bp)
GGAATGGATCCAAGCGAGTCTCCGC
NONE
OsAffx.23829.1.S1_at--730--8013Chr02:10404731..10404755 (25 bp)
GGAGTGACCTCCGAATTGAACTGCA
NONE
OsAffx.23829.1.S1_at--972--8553Chr02:10404682..10404842 (25 bp)
TGGATCGGTTCCATCGCCGTGATAA
NONE
OsAffx.23829.1.S1_at--848--2494Chr02:10404845..10404869 (25 bp)
AACATGCGAGATGCAGTGCCTGCGT
NONE
OsAffx.23829.1.S1_at--180--7574Chr02:10404871..10404895 (25 bp)
GGGCCTGATGCGATCAAGCGACCGA
NONE
Target Sequence 
GTGACCGCGTTGGTTTACGCCATCACCTGCTTCGTGGCTTCGATCGTCGGGCTGGTGGTGATACAAGGCACCATCAGGAA
GTCAGGGAGGGTCTCGCTCATAGTGTTCATGGTCGCCGCCATCTTGGCGCTCAGCGTCGTCGTGATAGCTTGCTCCGGAG
CGGTNNGANTNNNNNTNNNGNACNNGNGNNNNCNNNNNNNNNNNNTNNNNNNNNCNNGNTNNCTGATACCTGGTATCTGG
TACCTGGTACCAGTATGGTACTGGCTGCATGCAGAATTCATGAAACATCAAGCACTACAACTTTTCGTCACCAACTACAC
AAAAGCAAACTCTAGCCGGAATGGATCCAAGCGAGTCTCCGCCGCACGCGGAGGGGCCGGGATCGTCGTCGGAGTGACCT
CCGAATTGAACTGCACACCGCTGCCCCGATTGGATGCACGCGGAACGGCGGAAGGCCACGCGCAGCCGACGCTCGAATGG
ATCGGTTCCATCGCCGTGATAAGTAACATGCGAGATGCAGTGCCTGCGTCGGGCCTGATGCGATCAAGCGACCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis