Browse Element(s) Details


OsAffx.21698.1.S1_at

Description gb:NM_190840.1
DB_XREF= gi:34908763
GEN=P0415A04.15
TID=OsAffx.21698.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0415A04.15 (P0415A04.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5775011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57720Os.22812.1.S1_a_at11/111+33695829..33701469expressed protein
LOC_Os01g57730Os.49540.1.A1_x_at11/111+33709276..33711335Peroxidase family protein, expressed
LOC_Os01g57730Os.33106.1.S1_at10/111+33709276..33711335Peroxidase family protein, expressed
LOC_Os01g57740Os.9788.1.S1_x_at10/111+33719258..33722684expressed protein
LOC_Os01g57750OsAffx.21698.1.S1_at11/111+33723652..33724561hypothetical protein
LOC_Os01g57760OsAffx.21697.1.S1_at11/111+33731081..33732063retrotransposon protein, putative, unclassified
LOC_Os01g57770Os.6638.1.S1_x_at11/111+33736503..33742423hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g57770Os.46747.1.S1_at11/111+33736503..33742423hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g57770Os.6638.1.S1_at9/111+33736503..33742423hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g57770Os.55355.1.S1_x_at2/111+33736503..33742423hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g57780NANA1+33743993..33747210retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21698.1.S1_at--410--1631Chr01:33723689..33723713 (25 bp)
AGCGGCAGCCGGAGGGTGTTGCTCA
LOC_Os01g57750
OsAffx.21698.1.S1_at--1017--7411Chr01:33723704..33723728 (25 bp)
GTGTTGCTCAGAGCCAAGAAGCCGA
LOC_Os01g57750
OsAffx.21698.1.S1_at--868--2651Chr01:33723722..33723746 (25 bp)
AAGCCGACGGCAGCGATTGGAAAGT
LOC_Os01g57750
OsAffx.21698.1.S1_at--880--2871Chr01:33723743..33723767 (25 bp)
AAGTGGAGCTTGGAGCCGAGTACCC
LOC_Os01g57750
OsAffx.21698.1.S1_at--29--5931Chr01:33723748..33723772 (25 bp)
GAGCTTGGAGCCGAGTACCCCTGTA
LOC_Os01g57750
OsAffx.21698.1.S1_at--85--10871Chr01:33723752..33723776 (25 bp)
TTGGAGCCGAGTACCCCTGTATAGC
LOC_Os01g57750
OsAffx.21698.1.S1_at--998--6051Chr01:33723760..33723784 (25 bp)
GAGTACCCCTGTATAGCTAGCGGTG
LOC_Os01g57750
OsAffx.21698.1.S1_at--625--1791Chr01:33723764..33723788 (25 bp)
ACCCCTGTATAGCTAGCGGTGGAGC
LOC_Os01g57750
OsAffx.21698.1.S1_at--154--10011Chr01:33723773..33723797 (25 bp)
TAGCTAGCGGTGGAGCTCGGACGGT
LOC_Os01g57750
OsAffx.21698.1.S1_at--866--8111Chr01:33723791..33723815 (25 bp)
GGACGGTGGCGTGGACTCCTCCTAA
LOC_Os01g57750
OsAffx.21698.1.S1_at--597--8351Chr01:33723798..33723822 (25 bp)
GGCGTGGACTCCTCCTAACCGGGTG
LOC_Os01g57750
Target Sequence 
AGCGGCAGCCGGAGGGTGTTGCTCAGAGCCAAGAAGCCGACGGCAGCGATTGGAAAGTGGAGCTTGGAGCCGAGTACCCC
TGTATAGCTAGCGGTGGAGCTCGGACGGTGGCGTGGACTCCTCCTAACCGGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis