Browse Element(s) Details


Os.9552.1.S1_s_at

Description gb:AU085747
DB_XREF= gi:7332401
DB_XREF=AU085747
CLONE=C52285
TID=Os.9552.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.9552 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2635011/11hypothetical protein
LOC_Os12g4404011/11transposase protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26290Os.27435.1.S1_x_at6/1111+14552401..14554131hypothetical protein
LOC_Os11g26290Os.46334.1.S1_x_at2/1111+14552401..14554131hypothetical protein
LOC_Os11g26290Os.46334.1.S1_at1/1111+14552401..14554131hypothetical protein
LOC_Os11g26290OsAffx.3869.1.S1_at1/1111+14552401..14554131hypothetical protein
LOC_Os11g26300Os.51856.1.S2_x_at2/1111+14556284..14561745transposon protein, putative, unclassified
LOC_Os11g26300Os.51856.1.S2_at2/1111+14556284..14561745transposon protein, putative, unclassified
LOC_Os11g26300Os.46985.1.S1_x_at2/1111+14556284..14561745transposon protein, putative, unclassified
LOC_Os11g26300OsAffx.22711.4.A1_x_at1/1111+14556284..14561745transposon protein, putative, unclassified
LOC_Os11g26309NANA11+14564551..14564798NA
LOC_Os11g26320OsAffx.22421.4.S1_x_at2/1111+14565338..14568568transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g26320OsAffx.22421.1.S1_at2/1111+14565338..14568568transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g26320Os.26886.3.S1_x_at1/1111+14565338..14568568transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g26320OsAffx.16244.1.S1_x_at1/1111+14565338..14568568transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g26330NANA11+14571053..14571436retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26340Os.53724.1.S1_at11/1111+14574976..14575506expressed protein
LOC_Os11g26350Os.9552.1.S1_s_at11/1111+14578884..14581328hypothetical protein
LOC_Os11g26350Os.27105.1.S2_s_at9/1111+14578884..14581328hypothetical protein
LOC_Os11g26350Os.27105.1.S1_at1/1111+14578884..14581328hypothetical protein
LOC_Os11g26360Os.47463.1.S1_x_at6/1111+14582564..14585881retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26360Os.14491.2.S1_x_at4/1111+14582564..14585881retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26370OsAffx.31869.1.S1_at7/1111+14589007..14590137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26370OsAffx.31869.5.S1_x_at2/1111+14589007..14590137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26370OsAffx.31869.4.S1_at1/1111+14589007..14590137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26370OsAffx.31869.4.S1_x_at1/1111+14589007..14590137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26370OsAffx.31869.2.S1_at1/1111+14589007..14590137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26380Os.27037.1.A1_at1/1111+14601779..14608118transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9552.1.S1_s_at--309--8912Chr12:27282218..27282242 (25 bp)
TGAGCACTAATCACATTTGTTTATG
LOC_Os12g44040
Os.9552.1.S1_s_at--654--10252Chr12:27282233..27282257 (25 bp)
TTTGTTTATGTTTCCATCAATCCAA
LOC_Os12g44040
Os.9552.1.S1_s_at--10--5512Chr12:27282259..27282283 (25 bp)
GAACACACATGTCCATACAGTGGCA
LOC_Os12g44040
Os.9552.1.S1_s_at--246--852Chr12:27282292..27282316 (25 bp)
ATGGCATATGACTTCTAACTCAATT
LOC_Os12g44040
Os.9552.1.S1_s_at--316--152Chr12:27282337..27282361 (25 bp)
ATTAGTTGCACTGCAGACTCTGGCA
LOC_Os12g44040
Os.9552.1.S1_s_at--748--5712Chr12:27282352..27282376 (25 bp)
GACTCTGGCAATGTCCTTTATTTGA
LOC_Os12g44040
Os.9552.1.S1_s_at--822--6792Chr12:27282389..27282413 (25 bp)
GTTTTGGTAACTATACATGCTAGCA
LOC_Os12g44040
Os.9552.1.S1_s_at--1011--293Chr12:27282428..27282452 (25 bp)
ATAGCTCTGCATTTTACATGGTGAC
LOC_Os12g44040
Os.9552.1.S1_s_at--294--3512Chr12:27282444..27282468 (25 bp)
CATGGTGACTTTCTTTACTTTAAAT
LOC_Os12g44040
Os.9552.1.S1_s_at--1083--312Chr12:27282467..27282491 (25 bp)
ATACGACTTGTAACTATATGTCCAT
LOC_Os12g44040
Os.9552.1.S1_s_at--586--272Chr12:27282482..27282506 (25 bp)
ATATGTCCATACATTTGTACAGGAG
LOC_Os12g44040
Target Sequence 
TGAGCACTAATCACATTTGTTTATGTTTCCATCAATCCAAAGAACACACATGTCCATACAGTGGCATGATAGTTATGGCA
TATGACTTCTAACTCAATTTAATCATGTTAGATACTAAAATTAGTTGCACTGCAGACTCTGGCAATGTCCTTTATTTGAA
GAAATTATGAAGTTTTGGTAACTATACATGCTAGCAGAAAACTAGATAAAATAGCTCTGCATTTTACATGGTGACTTTCT
TTACTTTAAATACGACTTGTAACTATATGTCCATACATTTGTACAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9552.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis