Browse Element(s) Details


Os.53724.1.S1_at

Description gb:AK099523.1
DB_XREF= gi:32984732
TID=Os.53724.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53724 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013030G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013030G07, full insert sequence.
FL= gb:AK099523.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2634011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26290Os.27435.1.S1_x_at6/1111+14552401..14554131hypothetical protein
LOC_Os11g26290Os.46334.1.S1_x_at2/1111+14552401..14554131hypothetical protein
LOC_Os11g26290Os.46334.1.S1_at1/1111+14552401..14554131hypothetical protein
LOC_Os11g26290OsAffx.3869.1.S1_at1/1111+14552401..14554131hypothetical protein
LOC_Os11g26300Os.51856.1.S2_x_at2/1111+14556284..14561745transposon protein, putative, unclassified
LOC_Os11g26300Os.51856.1.S2_at2/1111+14556284..14561745transposon protein, putative, unclassified
LOC_Os11g26300Os.46985.1.S1_x_at2/1111+14556284..14561745transposon protein, putative, unclassified
LOC_Os11g26300OsAffx.22711.4.A1_x_at1/1111+14556284..14561745transposon protein, putative, unclassified
LOC_Os11g26309NANA11+14564551..14564798NA
LOC_Os11g26320OsAffx.22421.4.S1_x_at2/1111+14565338..14568568transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g26320OsAffx.22421.1.S1_at2/1111+14565338..14568568transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g26320Os.26886.3.S1_x_at1/1111+14565338..14568568transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g26320OsAffx.16244.1.S1_x_at1/1111+14565338..14568568transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g26330NANA11+14571053..14571436retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26340Os.53724.1.S1_at11/1111+14574976..14575506expressed protein
LOC_Os11g26350Os.9552.1.S1_s_at11/1111+14578884..14581328hypothetical protein
LOC_Os11g26350Os.27105.1.S2_s_at9/1111+14578884..14581328hypothetical protein
LOC_Os11g26350Os.27105.1.S1_at1/1111+14578884..14581328hypothetical protein
LOC_Os11g26360Os.47463.1.S1_x_at6/1111+14582564..14585881retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26360Os.14491.2.S1_x_at4/1111+14582564..14585881retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26370OsAffx.31869.1.S1_at7/1111+14589007..14590137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26370OsAffx.31869.5.S1_x_at2/1111+14589007..14590137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26370OsAffx.31869.4.S1_at1/1111+14589007..14590137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26370OsAffx.31869.4.S1_x_at1/1111+14589007..14590137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26370OsAffx.31869.2.S1_at1/1111+14589007..14590137retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53724.1.S1_at--701--9091Chr11:14575021..14575045 (25 bp)
TGCTCATCTCCTCCATTGTAGTGAT
LOC_Os11g26340
Os.53724.1.S1_at--315--8871Chr11:14575042..14575066 (25 bp)
TGATGACATTCTTACTCCTCCTGAG
LOC_Os11g26340
Os.53724.1.S1_at--977--1111Chr11:14575152..14575176 (25 bp)
AGTGAGATGGATTCGGTGCCGTACC
LOC_Os11g26340
Os.53724.1.S1_at--138--1971Chr11:14575206..14575230 (25 bp)
ACTGTCTACAGACCGCTTGGCAGAG
LOC_Os11g26340
Os.53724.1.S1_at--612--1311Chr11:14575227..14575251 (25 bp)
AGAGGTGCGGCTTGCAACCCTATTT
LOC_Os11g26340
Os.53724.1.S1_at--608--1411Chr11:14575265..14575289 (25 bp)
AGACAGGTACACTGGCCGTGGCTGC
LOC_Os11g26340
Os.53724.1.S1_at--474--7531Chr11:14575282..14575306 (25 bp)
GTGGCTGCAAATCCCGTTACCAGTG
LOC_Os11g26340
Os.53724.1.S1_at--117--7071Chr11:14575316..14575340 (25 bp)
GTAAGATATCTCCATCAGGGTGCAT
LOC_Os11g26340
Os.53724.1.S1_at--218--9751Chr11:14575343..14575367 (25 bp)
TAATATCTTCACACCCTATGTACGC
LOC_Os11g26340
Os.53724.1.S1_at--1075--5491Chr11:14575431..14575455 (25 bp)
GAACACTCAGTTGATCTCGTCTTTT
LOC_Os11g26340
Os.53724.1.S1_at--1140--31Chr11:14575462..14575486 (25 bp)
ATTGTTACGGTATTCCAGGCATATA
LOC_Os11g26340
Target Sequence 
TGCTCATCTCCTCCATTGTAGTGATGACATTCTTACTCCTCCTGAGCGGCGCCGGCGCTCTCACCGCCGATCACGCCACC
GTCGGCGTCGCCGTGGCCGGCGGCAAGCGCACCCGCCACGCGGAGGAACTAAGTGAGATGGATTCGGTGCCGTACCCGCA
AAGAAGGGTGCTACAAGGTGGCAACACTGTCTACAGACCGCTTGGCAGAGGTGCGGCTTGCAACCCTATTTGCCCTGGTC
GCGGAGACAGGTACACTGGCCGTGGCTGCAAATCCCGTTACCAGTGCAGGGGCATGTAAGATATCTCCATCAGGGTGCAT
GATAATATCTTCACACCCTATGTACGCATGCATGCTTGGAAATTATTGGGCAGTTCAGCAGTTGTTCTATGTACATCGAT
GGAGTAGGTTGAACACTCAGTTGATCTCGTCTTTTTTCAGTATTGTTACGGTATTCCAGGCATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53724.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis