Browse Element(s) Details


OsAffx.20111.1.S1_at

Description tigr:9640.m04337
TID=OsAffx.20111.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=secretory acid phosphatase precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4401011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43950Os.6492.1.S1_at11/1112+27237930..27243182Associated with HOX family protein, expressed
LOC_Os12g43950Os.4650.1.S1_at1/1112+27237930..27243182Associated with HOX family protein, expressed
LOC_Os12g43960OsAffx.7884.1.S1_at11/1112+27251828..27252368hypothetical protein
LOC_Os12g43970Os.54768.1.S1_at10/1112+27252953..27255061hydrolase, alpha/beta fold family protein, expressed
LOC_Os12g43980Os.43567.1.S1_x_at8/1112+27255789..27258283transposon protein, putative, unclassified, expressed
LOC_Os12g43980Os.38172.1.S1_x_at4/1112+27255789..27258283transposon protein, putative, unclassified, expressed
LOC_Os12g43990Os.57165.1.S1_at11/1112+27260197..27261033expressed protein
LOC_Os12g44000Os.12316.1.S1_at10/1112+27261833..27265116Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os12g44010OsAffx.20111.1.S1_at11/1112+27267698..27269080expressed protein
LOC_Os12g44020Os.15738.1.S1_at11/1112+27270290..27273545expressed protein
LOC_Os12g44020OsAffx.9512.1.S1_x_at3/1112+27270290..27273545expressed protein
LOC_Os12g44030OsAffx.9512.1.S1_x_at1/1112+27276298..27277590expressed protein
LOC_Os12g44040Os.27105.1.S1_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44040Os.27105.1.S2_s_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44040Os.9552.1.S1_s_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44050Os.53424.1.S1_at10/1112+27282857..27283690expressed protein
LOC_Os12g44060Os.9556.1.S1_at11/1112+27291162..27293894nodulin family protein, putative, expressed
LOC_Os12g44060Os.9556.1.S2_at11/1112+27291162..27293894nodulin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016036biological_processcellular response to phosphate starvation
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20111.1.S1_at--766--8411Chr12:27268269..27268293 (25 bp)
GGCCGCTGTGGTACTCGGTGAGGAT
LOC_Os12g44010
OsAffx.20111.1.S1_at--695--5091Chr12:27268235..27268259 (25 bp)
GCACGTGATCGTGCTGGCGTCGTAC
LOC_Os12g44010
OsAffx.20111.1.S1_at--824--8931Chr12:27268140..27268164 (25 bp)
TGACGCCATGGCTGATCGTGTGCGT
LOC_Os12g44010
OsAffx.20111.1.S1_at--1028--3491Chr12:27268134..27268158 (25 bp)
CATGGCTGATCGTGTGCGTGCACTC
LOC_Os12g44010
OsAffx.20111.1.S1_at--14--2011Chr12:27268113..27268137 (25 bp)
ACTCGCCGTGGTACAGCAGCAACGG
LOC_Os12g44010
OsAffx.20111.1.S1_at--587--5051Chr12:27268098..27268122 (25 bp)
GCAGCAACGGATACCACTACATGGA
LOC_Os12g44010
OsAffx.20111.1.S1_at--612--1151Chr12:27268068..27268092 (25 bp)
AGTCGATGCGCGTGGAGTTCGAGCG
LOC_Os12g44010
OsAffx.20111.1.S1_at--1089--8091Chr12:27267984..27268008 (25 bp)
GGACGCGGCGGGTGTCGAACGTGGC
LOC_Os12g44010
OsAffx.20111.1.S1_at--786--1851Chr12:27267957..27267981 (25 bp)
ACGACATCGCCAACGGGATGGCGAC
LOC_Os12g44010
OsAffx.20111.1.S1_at--868--8411Chr12:27267849..27267873 (25 bp)
GGCCGCAGCCGGACTACTCGGTGTT
LOC_Os12g44010
OsAffx.20111.1.S1_at--898--9531Chr12:27267768..27267792 (25 bp)
TCTACGAGTGGCACCGCAACAGCGA
LOC_Os12g44010
Target Sequence 
GGCCGCTGTGGTACTCGGTGAGGATGGCGTCGGCGCACGTGATCGTGCTGGCGTCGTACGCGGCGTACGGCAAGTACACG
CCGCAGTGGAGGTGGCTGGAGGGGGAGCTGAGGCGCGTGGACAGGGCGGTGACGCCATGGCTGATCGTGTGCGTGCACTC
GCCGTGGTACAGCAGCAACGGATACCACTACATGGAGGGGGAGTCGATGCGCGTGGAGTTCGAGCGGTGGCTCGTCGACG
CCAAGGCCGACGTGGTGCTCGCCGGGCACGTCCACTCGTACGAGCGGACGCGGCGGGTGTCGAACGTGGCGTACGACATC
GCCAACGGGATGGCGACGCCGGTGTTCAACCGGTCGGCGCCGGTGTACATCAACATCGGCGACGGGGGGAACATCGAGGG
GCTCGCCGACGACTTCCGGTGGCCGCAGCCGGACTACTCGGTGTTCCGGGAGGCCAGCTTCGGCCACGCCACGCTGCAGA
TCGTCAACCGGACGCACGCCTTCTACGAGTGGCACCGCAACAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis