Browse Element(s) Details


Os.6492.1.S1_at

Description gb:AK070465.1
DB_XREF= gi:32980489
TID=Os.6492.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6492 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-044-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054P21, full insert sequence.
FL= gb:AK070465.1 gb:AK121356.1 gb:AK104872.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4395011/11Associated with HOX family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43890Os.24486.1.A1_at11/1112+27216117..27217280GNS1/SUR4 membrane family protein, putative, expressed
LOC_Os12g43900NANA12+27219001..27223042retrotransposon protein, putative, LINE subclass
LOC_Os12g43910NANA12+27223677..27224906retrotransposon protein, putative, LINE subclass
LOC_Os12g43930Os.33683.1.S1_at10/1112+27230138..27232311Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g43940Os.53453.1.S1_at10/1112+27232877..27237839TPR Domain containing protein, expressed
LOC_Os12g43950Os.6492.1.S1_at11/1112+27237930..27243182Associated with HOX family protein, expressed
LOC_Os12g43950Os.4650.1.S1_at1/1112+27237930..27243182Associated with HOX family protein, expressed
LOC_Os12g43960OsAffx.7884.1.S1_at11/1112+27251828..27252368hypothetical protein
LOC_Os12g43970Os.54768.1.S1_at10/1112+27252953..27255061hydrolase, alpha/beta fold family protein, expressed
LOC_Os12g43980Os.43567.1.S1_x_at8/1112+27255789..27258283transposon protein, putative, unclassified, expressed
LOC_Os12g43980Os.38172.1.S1_x_at4/1112+27255789..27258283transposon protein, putative, unclassified, expressed
LOC_Os12g43990Os.57165.1.S1_at11/1112+27260197..27261033expressed protein
LOC_Os12g44000Os.12316.1.S1_at10/1112+27261833..27265116Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os12g44010OsAffx.20111.1.S1_at11/1112+27267698..27269080expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6492.1.S1_at--337--1791Chr12:27238474..27238498 (25 bp)
ACCGTCGCATCTTCGGACTATGATT
LOC_Os12g43950
Os.6492.1.S1_at--13--9651Chr12:27238442..27238466 (25 bp)
TCAGATGGATCAACGGCAACGGTTT
LOC_Os12g43950
Os.6492.1.S1_at--407--5151Chr12:27238427..27238451 (25 bp)
GCAACGGTTTGAGCATTCACCTCTT
LOC_Os12g43950
Os.6492.1.S1_at--1011--9671Chr12:27238411..27238435 (25 bp)
TCACCTCTTCTGCATGATTTTGTGG
LOC_Os12g43950
Os.6492.1.S1_at--1080--5051Chr12:27238329..27238353 (25 bp)
GCAGCATTTGTAACACCTAGTGGGA
LOC_Os12g43950
Os.6492.1.S1_at--990--7931Chr12:27238280..27238304 (25 bp)
GGATTTGTAGCTTTGTAGTTGCCAT
LOC_Os12g43950
Os.6492.1.S1_at--29--2351Chr12:27238137..27238161 (25 bp)
AAAGCTTGTGATTTGAGCACCATAT
LOC_Os12g43950
Os.6492.1.S1_at--305--7071Chr12:27238106..27238130 (25 bp)
GTAATGGTTACTTAGGGCTGTCCAA
LOC_Os12g43950
Os.6492.1.S1_at--231--8351Chr12:27238091..27238115 (25 bp)
GGCTGTCCAATTATACACTCTCACA
LOC_Os12g43950
Os.6492.1.S1_at--983--5911Chr12:27238057..27238081 (25 bp)
GAGCTTTTCTGTCATTCTTTTACAC
LOC_Os12g43950
Os.6492.1.S1_at--104--7531Chr12:27238026..27238050 (25 bp)
GTGGAGCTGAAAACTTGCTGTGTCC
LOC_Os12g43950
Target Sequence 
ACCGTCGCATCTTCGGACTATGATTCGATGAATCAGATGGATCAACGGCAACGGTTTGAGCATTCACCTCTTCTGCATGA
TTTTGTGGCCTGAAGACAGCAGAGAAANAATCAGGACCATGGACATTAAGAGAGAGAATTGGGGGGCAGCATTTGTAACA
CCTAGTGGGAGAATAACATGCCTGAAAGGGCATGGGATTTGTAGCTTTGTAGTTGCCATTTAATACAGAAGAGGAGGTAT
AGCAGGAAATGTAATATAAGGTTAGATGGTGGGGGTGATAGGGTAAAGAATCATATGTAAAGATAAAATCCATCATTACT
ATATATATATATATATATATNCGTGTAAAAGCTTGTGATTTGAGCACCATATTGTAAAGTAATGGTTACTTAGGGCTGTC
CAATTATACACTCTCACACTACTATTAGAGCTTTTCTGTCATTCTTTTACACGTGTAAGTGGAGCTGAAAACTTGCTGTG
TCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis