Browse Element(s) Details


OsAffx.7884.1.S1_at

Description tigr:9640.m04333
TID=OsAffx.7884.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4396011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43930Os.33683.1.S1_at10/1112+27230138..27232311Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g43940Os.53453.1.S1_at10/1112+27232877..27237839TPR Domain containing protein, expressed
LOC_Os12g43950Os.6492.1.S1_at11/1112+27237930..27243182Associated with HOX family protein, expressed
LOC_Os12g43950Os.4650.1.S1_at1/1112+27237930..27243182Associated with HOX family protein, expressed
LOC_Os12g43960OsAffx.7884.1.S1_at11/1112+27251828..27252368hypothetical protein
LOC_Os12g43970Os.54768.1.S1_at10/1112+27252953..27255061hydrolase, alpha/beta fold family protein, expressed
LOC_Os12g43980Os.43567.1.S1_x_at8/1112+27255789..27258283transposon protein, putative, unclassified, expressed
LOC_Os12g43980Os.38172.1.S1_x_at4/1112+27255789..27258283transposon protein, putative, unclassified, expressed
LOC_Os12g43990Os.57165.1.S1_at11/1112+27260197..27261033expressed protein
LOC_Os12g44000Os.12316.1.S1_at10/1112+27261833..27265116Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os12g44010OsAffx.20111.1.S1_at11/1112+27267698..27269080expressed protein
LOC_Os12g44020Os.15738.1.S1_at11/1112+27270290..27273545expressed protein
LOC_Os12g44020OsAffx.9512.1.S1_x_at3/1112+27270290..27273545expressed protein
LOC_Os12g44030OsAffx.9512.1.S1_x_at1/1112+27276298..27277590expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7884.1.S1_at--930--1431Chr12:27252317..27252338 (22 bp)
AGAACCTTCTTCCTCTCGAGGTTGT
LOC_Os12g43960
OsAffx.7884.1.S1_at--20--9511Chr12:27252015..27252325 (25 bp)
TCTCGAGGTTGTCCAGAGAGGCTAA
LOC_Os12g43960
OsAffx.7884.1.S1_at--340--6211Chr12:27251998..27252022 (25 bp)
GAGGCTAAGATTTTGCAATCACCTG
LOC_Os12g43960
OsAffx.7884.1.S1_at--857--5191Chr12:27251984..27252008 (25 bp)
GCAATCACCTGGACTCATTATCTTG
LOC_Os12g43960
OsAffx.7884.1.S1_at--208--3591Chr12:27251969..27251993 (25 bp)
CATTATCTTGATGAGGTCTGTTCAG
LOC_Os12g43960
OsAffx.7884.1.S1_at--575--7811Chr12:27251955..27251979 (25 bp)
GGTCTGTTCAGTTCGTTGCATCTCA
LOC_Os12g43960
OsAffx.7884.1.S1_at--1022--1211Chr12:27251946..27251970 (25 bp)
AGTTCGTTGCATCTCAAACTGTTGA
LOC_Os12g43960
OsAffx.7884.1.S1_at--873--8811Chr12:27251927..27251951 (25 bp)
TGTTGAGTTCGTGCAGGATCTGGCA
LOC_Os12g43960
OsAffx.7884.1.S1_at--806--5011Chr12:27251915..27251939 (25 bp)
GCAGGATCTGGCACAGCAGTACAGT
LOC_Os12g43960
OsAffx.7884.1.S1_at--431--7031Chr12:27251897..27251921 (25 bp)
GTACAGTGCAGAGCTAAGCCCTGTT
LOC_Os12g43960
OsAffx.7884.1.S1_at--602--1351Chr12:27251888..27251912 (25 bp)
AGAGCTAAGCCCTGTTTTGTTTGGA
LOC_Os12g43960
Target Sequence 
AGAACCTTCTTCCTCTCGAGGTTGTCCAGAGAGGCTAAGATTTTGCAATCACCTGGACTCATTATCTTGATGAGGTCTGT
TCAGTTCGTTGCATCTCAAACTGTTGAGTTCGTGCAGGATCTGGCACAGCAGTACAGTGCAGAGCTAAGCCCTGTTTTGT
TTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis