Browse Element(s) Details


Os.33683.1.S1_at

Description gb:AK062128.1
DB_XREF= gi:32972146
TID=Os.33683.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33683 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013030E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-045-D12, full insert sequence.
FL= gb:AK099519.1 gb:AK062128.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4393010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43870NANA12+27205413..27205739hypothetical protein
LOC_Os12g43880OsAffx.32182.1.S1_at11/1112+27210143..27212401expressed protein
LOC_Os12g43890Os.24486.1.A1_at11/1112+27216117..27217280GNS1/SUR4 membrane family protein, putative, expressed
LOC_Os12g43900NANA12+27219001..27223042retrotransposon protein, putative, LINE subclass
LOC_Os12g43910NANA12+27223677..27224906retrotransposon protein, putative, LINE subclass
LOC_Os12g43930Os.33683.1.S1_at10/1112+27230138..27232311Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g43940Os.53453.1.S1_at10/1112+27232877..27237839TPR Domain containing protein, expressed
LOC_Os12g43950Os.6492.1.S1_at11/1112+27237930..27243182Associated with HOX family protein, expressed
LOC_Os12g43950Os.4650.1.S1_at1/1112+27237930..27243182Associated with HOX family protein, expressed
LOC_Os12g43960OsAffx.7884.1.S1_at11/1112+27251828..27252368hypothetical protein
LOC_Os12g43970Os.54768.1.S1_at10/1112+27252953..27255061hydrolase, alpha/beta fold family protein, expressed
LOC_Os12g43980Os.43567.1.S1_x_at8/1112+27255789..27258283transposon protein, putative, unclassified, expressed
LOC_Os12g43980Os.38172.1.S1_x_at4/1112+27255789..27258283transposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33683.1.S1_at--427--1131Chr12:27231714..27231738 (25 bp)
AGTCCATGGGTTCCCAGATGCAACC
LOC_Os12g43930
Os.33683.1.S1_at--623--1291Chr12:27231729..27231753 (25 bp)
AGATGCAACCGCCTATGGGCAGCCT
LOC_Os12g43930
Os.33683.1.S1_at--203--9131Chr12:27231753..27231777 (25 bp)
TGCTGGTTTTCCCTACGGATATGGA
LOC_Os12g43930
Os.33683.1.S1_at--883--3751Chr12:27231898..27231922 (25 bp)
CTCATCCTGGTTGGTTTTCTTGTGA
LOC_Os12g43930
Os.33683.1.S1_at--754--6591Chr12:27231921..27231945 (25 bp)
GATTGCAAGCCTCATCACATTCTAG
LOC_Os12g43930
Os.33683.1.S1_at--1138--10811Chr12:27231948..27231972 (25 bp)
TTGTGCCATCATATTGCTGTGCTTG
LOC_Os12g43930
Os.33683.1.S1_at--30--2971Chr12:27231983..27232007 (25 bp)
AATGATTTCCCGAGTTGCTTTCTGA
LOC_Os12g43930
Os.33683.1.S1_at--496--6291Chr12:27232006..27232030 (25 bp)
GATGTTGTGCATTACCTTGCCTCCA
LOC_Os12g43930
Os.33683.1.S1_at--1119--5234Chr12:27232046..27232070 (25 bp)
GAATCAAGTGGTTCTTTTGCGCAAA
LOC_Os12g43930
Os.33683.1.S1_at--1066--831Chr12:27232147..27232171 (25 bp)
ATGGAAGCTCTGTCTGAATGAACTA
LOC_Os12g43930
Os.33683.1.S1_at--420--6871NONE
GTATTCCTCTATGGTTTGTACTAAA
NONE
Target Sequence 
AGTCCATGGGTTCCCAGATGCAACCGCCTATGGGCAGCCTGCTGGTTTTCCCTACGGATATGGACACGGCCACGGTCACG
GTCATGGGCACGCGTTCCACGGCGGACATGCCCATGCTGCTGCTGCTCCCCGCCATGGACCGCCTGGGCAACAACAGCAG
GCGGATGTGTACCTGAAGGCGCTTCTCATCCTGGTTGGTTTTCTTGTGATTGCAAGCCTCATCACATTCTAGGATTGTGC
CATCATATTGCTGTGCTTGTAATAAGAGGAATGATTTCCCGAGTTGCTTTCTGATGTTGTGCATTACCTTGCCTCCACAC
ACGACCCAGTCTGAATCAAGTGGTTCTTTTGCGCAAAGTGTTGATAGAATTCTTGTATATACGAAATAGATGTGGTCGTG
TGGAGCATATGTGTACTGTGGTTCATGAATAACATGGAAGCTCTGTCTGAATGAACTAGAGCAATGATACTTATATTGTG
TTTTTGATATGATGATGCTCAGAATGAGCAGGCTATGCAATTGTTTGGAGCACAAANGTATTCCTCTATGGTTTGTACTA
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis