Browse Element(s) Details


OsAffx.32183.1.S1_s_at

Description tigr:9640.m04344
TID=OsAffx.32183.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4408011/11CHCH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44030OsAffx.9512.1.S1_x_at1/1112+27276298..27277590expressed protein
LOC_Os12g44040Os.27105.1.S1_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44040Os.27105.1.S2_s_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44040Os.9552.1.S1_s_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44050Os.53424.1.S1_at10/1112+27282857..27283690expressed protein
LOC_Os12g44060Os.9556.1.S1_at11/1112+27291162..27293894nodulin family protein, putative, expressed
LOC_Os12g44060Os.9556.1.S2_at11/1112+27291162..27293894nodulin family protein, putative, expressed
LOC_Os12g44070Os.56205.1.S1_at11/1112+27296483..27298336nodulin family protein, putative, expressed
LOC_Os12g44080OsAffx.32183.1.S1_at11/1112+27302494..27304149CHCH domain containing protein, expressed
LOC_Os12g44080OsAffx.32183.1.S1_s_at11/1112+27302494..27304149CHCH domain containing protein, expressed
LOC_Os12g44090Os.23212.1.S1_at11/1112+27306635..27310516leucine-rich repeat family protein, putative, expressed
LOC_Os12g44100Os.52621.1.S1_x_at11/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44100Os.52621.1.S1_at11/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44100Os.51071.1.A1_x_at11/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44100Os.51071.1.A1_at10/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44110Os.52570.1.S1_at11/1112+27325869..27327854expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32183.1.S1_s_at--808--8811Chr12:27302825..27302849 (25 bp)
TGTTGGATGCGTGCGGCGCCCACAA
LOC_Os12g44080
OsAffx.32183.1.S1_s_at--123--1451Chr12:27302801..27302825 (25 bp)
AGAAGGCGTTCCAGGAATGCGTCGC
LOC_Os12g44080
OsAffx.32183.1.S1_s_at--699--3011Chr12:27302786..27302810 (25 bp)
AATGCGTCGCCCAGCAAGGGATCCA
LOC_Os12g44080
OsAffx.32183.1.S1_s_at--21--2891Chr12:27302771..27302795 (25 bp)
AAGGGATCCACGTCAGCAGATGCCA
LOC_Os12g44080
OsAffx.32183.1.S1_s_at--964--1711Chr12:27302679..27302703 (25 bp)
ACCACCACCAGAATTCTCTGATGGA
LOC_Os12g44080
OsAffx.32183.1.S1_s_at--662--3771Chr12:27302664..27302688 (25 bp)
CTCTGATGGATGGATCGCCTGCCAG
LOC_Os12g44080
OsAffx.32183.1.S1_s_at--975--7991Chr12:27302657..27302681 (25 bp)
GGATGGATCGCCTGCCAGCCTGATG
LOC_Os12g44080
OsAffx.32183.1.S1_s_at--1099--3371Chr12:27302642..27302666 (25 bp)
CAGCCTGATGCATCATATCCATGAT
LOC_Os12g44080
OsAffx.32183.1.S1_s_at--854--8831Chr12:27302621..27302645 (25 bp)
TGATAGCAATGCAATCCATCGATTG
LOC_Os12g44080
OsAffx.32183.1.S1_s_at--1093--171Chr12:27302571..27302595 (25 bp)
ATTTATATCCGTTTTGCAGCCACAC
LOC_Os12g44080
OsAffx.32183.1.S1_s_at--1020--6791Chr12:27302561..27302585 (25 bp)
GTTTTGCAGCCACACGTAATAATAA
LOC_Os12g44080
Target Sequence 
TGTTGGATGCGTGCGGCGCCCACAAGAAGGCGTTCCAGGAATGCGTCGCCCAGCAAGGGATCCACGTCAGCAGATGCCAG
CCCTACCTCGACATGCTCAACGACTGCCGCCGGGACTCCGCCGCCTCCGCCGCCGTCGGCGTTGCCACCACCACCAGAAT
TCTCTGATGGATGGATCGCCTGCCAGCCTGATGCATCATATCCATGATAGCAATGCAATCCATCGATTGATTAAATTAGT
TTGATTGCTTGTTTATTTATATCCGTTTTGCAGCCACACGTAATAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32183.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis