Browse Element(s) Details


Os.52570.1.S1_at

Description gb:AK068058.1
DB_XREF= gi:32978076
TID=Os.52570.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52570 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132P13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132P13, full insert sequence.
FL= gb:AK068058.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4411011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44080OsAffx.32183.1.S1_at11/1112+27302494..27304149CHCH domain containing protein, expressed
LOC_Os12g44080OsAffx.32183.1.S1_s_at11/1112+27302494..27304149CHCH domain containing protein, expressed
LOC_Os12g44090Os.23212.1.S1_at11/1112+27306635..27310516leucine-rich repeat family protein, putative, expressed
LOC_Os12g44100Os.52621.1.S1_x_at11/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44100Os.52621.1.S1_at11/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44100Os.51071.1.A1_x_at11/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44100Os.51071.1.A1_at10/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44110Os.52570.1.S1_at11/1112+27325869..27327854expressed protein
LOC_Os12g44120NANA12+27338046..27338948transposon protein, putative, unclassified
LOC_Os12g44130Os.53455.1.S1_at11/1112+27341184..27343840expressed protein
LOC_Os12g44140Os.7063.1.S1_at11/1112+27345228..27348862expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52570.1.S1_at--122--1131Chr12:27326404..27326428 (25 bp)
AGTGAAGATGTCGTTCCTGTGGCTG
LOC_Os12g44110
Os.52570.1.S1_at--113--511Chr12:27326334..27326358 (25 bp)
ATCGGGCAGACGGAGCTGTACTACA
LOC_Os12g44110
Os.52570.1.S1_at--343--1611Chr12:27326321..27326345 (25 bp)
AGCTGTACTACAGGCAGTTCCCGGA
LOC_Os12g44110
Os.52570.1.S1_at--544--8431Chr12:27326248..27326272 (25 bp)
GGCCAACTACGCGAGCGGCTTCATG
LOC_Os12g44110
Os.52570.1.S1_at--797--9151Chr12:27326103..27326127 (25 bp)
TGCGCCCGCTGGTACAGGTTCAAGA
LOC_Os12g44110
Os.52570.1.S1_at--11--4091Chr12:27326056..27326080 (25 bp)
CGAGCTGCCGGATTATCATCATCAT
LOC_Os12g44110
Os.52570.1.S1_at--537--2331Chr12:27326016..27326040 (25 bp)
AACACCATAGCCTCCAAGGTTTAAT
LOC_Os12g44110
Os.52570.1.S1_at--1013--371Chr12:27325981..27326005 (25 bp)
ATCACAATCGATCACTCTACTGTAG
LOC_Os12g44110
Os.52570.1.S1_at--52--10431Chr12:27325943..27325967 (25 bp)
TTAGAGGTACGTCATCGATCGATGC
LOC_Os12g44110
Os.52570.1.S1_at--783--6391Chr12:27325927..27325951 (25 bp)
GATCGATGCATCACCATACACAGTA
LOC_Os12g44110
Os.52570.1.S1_at--1101--2411Chr12:27325872..27325896 (25 bp)
AAAACACTATAATCTCTTCTTCCTC
LOC_Os12g44110
Target Sequence 
AGTGAAGATGTCGTTCCTGTGGCTGGTGCCGCAGCAGGTGGCGGCGGGGATGTCGGAGGCGTTCGCGGCGATCGGGCAGA
CGGAGCTGTACTACAGGCAGTTCCCGGAGAACATGAGGAGCGTGGCGGGGGCGCTCTTCTTCCTGGCGTTCGCGCTGGCC
AACTACGCGAGCGGCTTCATGGTGGCGGCGGTGCACCGGACCACGGGGTGGCTGGCGCAGGATCTGAACCACGCCCGCCT
CGACCTCTTCTACCTAACCGTCGCGGCCATCGCGGCGGCCAACGTCTGCTACTTCCTCCTCTGCGCCCGCTGGTACAGGT
TCAAGAACACCACCATCGCCGACCACGTCGAGCTGCCGGATTATCATCATCATCAGCCCGGAACCGCCAACACCATAGCC
TCCAAGGTTTAATTAATTTTATTATCACAATCGATCACTCTACTGTAGATGGTAGATAGATTTAGAGGTACGTCATCGAT
CGATGCATCACCATACACAGTAGGAGTATAATATCTGTATGTATCAGACGCAAAAACACTATAATCTCTTCTTCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis