Browse Element(s) Details


Os.52621.1.S1_x_at

Description gb:AK068351.1
DB_XREF= gi:32978369
TID=Os.52621.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52621 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013136K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013136K21, full insert sequence.
FL= gb:AK068351.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4410011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44060Os.9556.1.S1_at11/1112+27291162..27293894nodulin family protein, putative, expressed
LOC_Os12g44060Os.9556.1.S2_at11/1112+27291162..27293894nodulin family protein, putative, expressed
LOC_Os12g44070Os.56205.1.S1_at11/1112+27296483..27298336nodulin family protein, putative, expressed
LOC_Os12g44080OsAffx.32183.1.S1_at11/1112+27302494..27304149CHCH domain containing protein, expressed
LOC_Os12g44080OsAffx.32183.1.S1_s_at11/1112+27302494..27304149CHCH domain containing protein, expressed
LOC_Os12g44090Os.23212.1.S1_at11/1112+27306635..27310516leucine-rich repeat family protein, putative, expressed
LOC_Os12g44100Os.52621.1.S1_x_at11/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44100Os.52621.1.S1_at11/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44100Os.51071.1.A1_x_at11/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44100Os.51071.1.A1_at10/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44110Os.52570.1.S1_at11/1112+27325869..27327854expressed protein
LOC_Os12g44120NANA12+27338046..27338948transposon protein, putative, unclassified
LOC_Os12g44130Os.53455.1.S1_at11/1112+27341184..27343840expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52621.1.S1_x_at--376--9432Chr08:23945001..23945025 (25 bp)
TCGGGCTGAACGAGCTGTGCTACAA
NONE
Os.52621.1.S1_x_at--431--1612Chr08:23945013..23945037 (25 bp)
AGCTGTGCTACAAGGAGTCGCCGGA
NONE
Os.52621.1.S1_x_at--972--4991Chr12:27313070..27313094 (25 bp)
GCAGGACATCGATAAGGGCCGCGTC
LOC_Os12g44100
Os.52621.1.S1_x_at--606--9551Chr12:27313041..27313065 (25 bp)
TCTTCTACCTTGTGGTGGGCGCCAT
LOC_Os12g44100
Os.52621.1.S1_x_at--23--2631Chr12:27313006..27313030 (25 bp)
AACCTGGCTTACTTCGTGGTCTGCG
LOC_Os12g44100
Os.52621.1.S1_x_at--455--7831Chr12:27312975..27312999 (25 bp)
GGTACAGGTCCAAGAACATCGCCGA
LOC_Os12g44100
Os.52621.1.S1_x_at--281--4711Chr12:27312945..27312969 (25 bp)
GCGGCGTTGAGCTTCTTCAGACCAG
LOC_Os12g44100
Os.52621.1.S1_x_at--667--7811Chr12:27312884..27312908 (25 bp)
GGTCTGACGACACTGACAGCTACTA
LOC_Os12g44100
Os.52621.1.S1_x_at--1138--9831Chr12:27312861..27312885 (25 bp)
TACACACGTACGCTGACTTTTCATA
LOC_Os12g44100
Os.52621.1.S1_x_at--634--6331Chr12:27312819..27312843 (25 bp)
GATGCATATGCATGTGTCCACTCCA
LOC_Os12g44100
Os.52621.1.S1_x_at--701--6471Chr12:27312760..27312784 (25 bp)
GATACTTGTACGATCCAGTTTGGAA
LOC_Os12g44100
Target Sequence 
TCGGGCTGAACGAGCTGTGCTACAAGGAGTCGCCGGAGAGCATGAGGAGCGTGGCGGGGGCGCTGTCGCCGCTGGCGCTG
GCGGTGGCGAGCTACGCGAGCGGGGCGATGGTGACGGCGGTGGAGCGGGCGACGGGGTGGCTGGCGCAGGACATCGATAA
GGGCCGCGTCGACCTCTTCTACCTTGTGGTGGGCGCCATGTCGGCCGCCAACCTGGCTTACTTCGTGGTCTGCGCGCTCT
GGTACAGGTCCAAGAACATCGCCGACCACGGCGGCGTTGAGCTTCTTCAGACCAGCTCCAAGCACAACGCCGACGCGCCG
CCGGCCATGGCGGTCTGACGACACTGACAGCTACTACACACGTACGCTGACTTTTCATACTTACTATATACTACTTGATG
CATATGCATGTGTCCACTCCATGATGAACACAACAGAGACAGAAAGAAGAGAGATGATACTTGTACGATCCAGTTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52621.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis