Browse Element(s) Details


Os.53455.1.S1_at

Description gb:AK072720.1
DB_XREF= gi:32982743
TID=Os.53455.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53455 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023136A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023136A05, full insert sequence.
FL= gb:AK072720.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4413011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44100Os.52621.1.S1_x_at11/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44100Os.52621.1.S1_at11/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44100Os.51071.1.A1_x_at11/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44100Os.51071.1.A1_at10/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44110Os.52570.1.S1_at11/1112+27325869..27327854expressed protein
LOC_Os12g44120NANA12+27338046..27338948transposon protein, putative, unclassified
LOC_Os12g44130Os.53455.1.S1_at11/1112+27341184..27343840expressed protein
LOC_Os12g44140Os.7063.1.S1_at11/1112+27345228..27348862expressed protein
LOC_Os12g44150Os.25634.1.S1_at11/1112+27353613..27360162Plasma membrane ATPase 1, putative, expressed
LOC_Os12g44160OsAffx.32184.1.S1_at11/1112+27360807..27364795HI0933-like protein, expressed
LOC_Os12g44160Os.39543.1.A1_at2/1112+27360807..27364795HI0933-like protein, expressed
LOC_Os12g44170Os.15760.2.S1_at10/1112+27364979..27369511pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53455.1.S1_at--631--6191Chr12:27343242..27343266 (25 bp)
GAGGAATTGCTCTCTGCATTTGGTA
LOC_Os12g44130
Os.53455.1.S1_at--1007--2431Chr12:27343304..27343328 (25 bp)
AAAAGATACCCATAGCGCTCGTGTT
LOC_Os12g44130
Os.53455.1.S1_at--72--1651Chr12:27343317..27343341 (25 bp)
AGCGCTCGTGTTGTGTTTGGGAAAA
LOC_Os12g44130
Os.53455.1.S1_at--883--3651Chr12:27343416..27343440 (25 bp)
CTTCATTATCTTCCTCCAATCAAGT
LOC_Os12g44130
Os.53455.1.S1_at--760--4371Chr12:27343431..27343455 (25 bp)
CCAATCAAGTTGAGCGTGCCTTCGC
LOC_Os12g44130
Os.53455.1.S1_at--527--3271Chr12:27343462..27343486 (25 bp)
CAAAGCCTCCCCTTACGGATATTAG
LOC_Os12g44130
Os.53455.1.S1_at--992--3911Chr12:27343515..27343539 (25 bp)
CTGGCTGGCCATTCATCTGTCAAGA
LOC_Os12g44130
Os.53455.1.S1_at--838--6651Chr12:27343614..27343638 (25 bp)
GTTGACAAGATGCTCACCGGGCCTT
LOC_Os12g44130
Os.53455.1.S1_at--753--6271Chr12:27343704..27343728 (25 bp)
GATGTCTTATTGTCTATGCTGTTTG
LOC_Os12g44130
Os.53455.1.S1_at--786--10131Chr12:27343718..27343742 (25 bp)
TATGCTGTTTGTCGCTGTCATCAAT
LOC_Os12g44130
Os.53455.1.S1_at--1011--7331Chr12:27343815..27343839 (25 bp)
GTGAATGGTAGTCCGTAGCCGTTAT
LOC_Os12g44130
Target Sequence 
GAGGAATTGCTCTCTGCATTTGGTAAGTTTGGTCTCGTGATTGAGTCTGAGACGGACATCGTAAAAGATACCCATAGCGC
TCGTGTTGTGTTTGGGAAAAGTGCTGAAGCTGAGGCGGCTTACAACAGCGCAGAAACTCTTGGTATGTTTGGTCCCCCGT
TTGCTACACCAAGGCTTCATTATCTTCCTCCAATCAAGTTGAGCGTGCCTTCGCCAGCTTCAAAGCCTCCCCTTACGGAT
ATTAGGAAAAACCTGGAGAGGATGATCTCATCCCTGGCTGGCCATTCATCTGTCAAGAAGGCAACTCCATCAGATGGATC
AAAGCAAATGCCAGAAAACCTTCTTGGGGAAATGCAGGGGCTTTTGGCAAAAGTTGACAAGATGCTCACCGGGCCTTCTG
CTACTGCTAGTAATCCTCATTAGCCCCCTACCGCATGGATTATTCTAATCCATCCGTAGTTAGATGTCTTATTGTCTATG
CTGTTTGTCGCTGTCATCAATTATAGCTGCCAATCTCGAGCTAATGATAAATTAGATGTTTTGACGATTTCGGCAGCAAC
GATTGAAACTATTGTGAATGGTAGTCCGTAGCCGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53455.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis