Browse Element(s) Details


Os.39543.1.A1_at

Description gb:CF311252
DB_XREF= gi:33683013
DB_XREF=ABF--06-G11.g1
CLONE=ABF--06-G11
TID=Os.39543.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39543 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_198810.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g441602/11HI0933-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44120NANA12+27338046..27338948transposon protein, putative, unclassified
LOC_Os12g44130Os.53455.1.S1_at11/1112+27341184..27343840expressed protein
LOC_Os12g44140Os.7063.1.S1_at11/1112+27345228..27348862expressed protein
LOC_Os12g44150Os.25634.1.S1_at11/1112+27353613..27360162Plasma membrane ATPase 1, putative, expressed
LOC_Os12g44160OsAffx.32184.1.S1_at11/1112+27360807..27364795HI0933-like protein, expressed
LOC_Os12g44160Os.39543.1.A1_at2/1112+27360807..27364795HI0933-like protein, expressed
LOC_Os12g44170Os.15760.2.S1_at10/1112+27364979..27369511pentatricopeptide, putative, expressed
LOC_Os12g44174Os.15760.1.S1_at11/1112+27369225..27369816expressed protein
LOC_Os12g44180Os.14785.1.S1_at11/1112+27373774..27377633expressed protein
LOC_Os12g44190Os.50620.1.S1_at11/1112+27378707..27380715ATPase 3, putative, expressed
LOC_Os12g44190OsAffx.25760.1.S1_x_at1/1112+27378707..27380715ATPase 3, putative, expressed
LOC_Os12g44200NANA12+27384508..27388587retrotransposon protein, putative, unclassified
LOC_Os12g44210Os.56885.1.S1_at11/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.32185.1.S1_s_at11/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.32185.1.S1_x_at2/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.25760.1.S1_x_at1/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39543.1.A1_at--209--6051Chr12:27364297..27364320 (24 bp)
GAGATATCGCTGAGCACTATGGAAA
LOC_Os12g44160
Os.39543.1.A1_at--606--2471Chr12:27364327..27364351 (25 bp)
AACAGCCCAACCTGTTTTTTGCAGG
LOC_Os12g44160
Os.39543.1.A1_at--244--8531Chr12:27364782..27364806 (25 bp)
TGGACGGATCATGAAGTATCACACT
NONE
Os.39543.1.A1_at--966--6891Chr12:27364797..27364821 (25 bp)
GTATCACACTGCAAAAAGGACTCCT
NONE
Os.39543.1.A1_at--1155--2411Chr12:27364810..27364834 (25 bp)
AAAAGGACTCCTGCCTGTTCTTACT
NONE
Os.39543.1.A1_at--148--9271Chr12:27364818..27364842 (25 bp)
TCCTGCCTGTTCTTACTACTGAAGA
NONE
Os.39543.1.A1_at--659--6391NONE
GATCGATCGTAGAGATGTACCCGTG
NONE
Os.39543.1.A1_at--751--2231Chr12:27364913..27364937 (25 bp)
ACAATCTCTTGTTATTAGTTAGCAA
NONE
Os.39543.1.A1_at--776--2831Chr12:27364948..27364972 (25 bp)
AAGTAGTGGATTGTGTACTCTGCAC
NONE
Os.39543.1.A1_at--11--7011Chr12:27364962..27364986 (25 bp)
GTACTCTGCACAGCTGTGAGCAAAT
NONE
Os.39543.1.A1_at--607--5131Chr12:27364981..27365005 (25 bp)
GCAAATCTAGTTGTCATTTCTCCAA
NONE
Target Sequence 
GAGATATCGCTGAGCACTATGGAAAGCAAGAAACAGCCCAACCTGTTTTTTGCAGGAGAGGTACTTAATGTTGATGGGGT
CACTGGCGGATTCAATTTTCAGAATGCATGGACCGGTGGGTATATAGCTGGGACAAGCATAGGAACATTGGCATCAAGCA
ACATGAGGCAGCAACAGCCATATTTGCAACTGGACGGATCATGAAGTATCACACTGCAAAAAGGACTCCTGCCTGTTCTT
ACTACTGAAGACTAACATTGACAAATGACATTGTAGATGTACATAGAGGTCAATGATCGATCGTAGAGATGTACCCGTGA
AACAATCTCTTGTTATTAGTTAGCAAACAAGTTCAGAAGTAGTGGATTGTGTACTCTGCACAGCTGTGAGCAAATCTAGT
TGTCATTTCTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39543.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis