Browse Element(s) Details


Os.7063.1.S1_at

Description gb:AK065543.1
DB_XREF= gi:32975561
TID=Os.7063.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7063 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013034D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034D09, full insert sequence.
FL= gb:AK065543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4414011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44110Os.52570.1.S1_at11/1112+27325869..27327854expressed protein
LOC_Os12g44120NANA12+27338046..27338948transposon protein, putative, unclassified
LOC_Os12g44130Os.53455.1.S1_at11/1112+27341184..27343840expressed protein
LOC_Os12g44140Os.7063.1.S1_at11/1112+27345228..27348862expressed protein
LOC_Os12g44150Os.25634.1.S1_at11/1112+27353613..27360162Plasma membrane ATPase 1, putative, expressed
LOC_Os12g44160OsAffx.32184.1.S1_at11/1112+27360807..27364795HI0933-like protein, expressed
LOC_Os12g44160Os.39543.1.A1_at2/1112+27360807..27364795HI0933-like protein, expressed
LOC_Os12g44170Os.15760.2.S1_at10/1112+27364979..27369511pentatricopeptide, putative, expressed
LOC_Os12g44174Os.15760.1.S1_at11/1112+27369225..27369816expressed protein
LOC_Os12g44180Os.14785.1.S1_at11/1112+27373774..27377633expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7063.1.S1_at--76--3911Chr12:27347718..27347742 (25 bp)
CTGGATCATTGACTGGGAAGCCCTC
LOC_Os12g44140
Os.7063.1.S1_at--990--5411Chr12:27347734..27347758 (25 bp)
GAAGCCCTCCGATGGATATTTGGTA
LOC_Os12g44140
Os.7063.1.S1_at--245--5691Chr12:27348506..27348530 (25 bp)
GACTAGAGATTTCCTGTGCCTTTAC
LOC_Os12g44140
Os.7063.1.S1_at--1065--7531Chr12:27348564..27348588 (25 bp)
GTGGCGAATGTTGACCCGGACGACA
LOC_Os12g44140
Os.7063.1.S1_at--462--3891Chr12:27348590..27348614 (25 bp)
CTGTGGATGCATTTCTTGGTACCTT
LOC_Os12g44140
Os.7063.1.S1_at--275--7851Chr12:27348607..27348631 (25 bp)
GGTACCTTACTATTGATCACCCAAC
LOC_Os12g44140
Os.7063.1.S1_at--784--6811Chr12:27348680..27348704 (25 bp)
GTTTTTGGGCTATGTTTCTCTTGAA
LOC_Os12g44140
Os.7063.1.S1_at--397--6991Chr12:27348710..27348734 (25 bp)
GTACTCTACCCTTATGGACCTGATA
LOC_Os12g44140
Os.7063.1.S1_at--1079--9831Chr12:27348733..27348757 (25 bp)
TAAATTTGTGTAACGCTGGCGCCCA
LOC_Os12g44140
Os.7063.1.S1_at--382--1251Chr12:27348806..27348830 (25 bp)
AGATTGGTCCTTTGCTTAGGCGAAT
LOC_Os12g44140
Os.7063.1.S1_at--1109--831Chr12:27348829..27348853 (25 bp)
ATGGAATCCTGTTGGCTGTTGCCCG
LOC_Os12g44140
Target Sequence 
CTGGATCATTGACTGGGAAGCCCTCCGATGGATATTTGGTAAATAGCTACAATTGTGACTTGGAGGACCTCCCAACAATG
CTTCTGCAGCAGGTTGCTAGTCAAGTAATCCACTGGCTTCATGAAGAAGCATTGGTTCTCGGTATGAATGNGACTAGAGA
TTTCCTGTGCCTTTACTTTGATCTTGAGCAAGGTGAAACGCTTGGCCTGGTGGCGAATGTTGACCCGGACGACACCTGTG
GATGCATTTCTTGGTACCTTACTATTGATCACCCAACGGAGGATGGGAAGATGTCAGCAGATAGTCAGGAGTTTGAGAAG
CGTAGGTTTTTGGGCTATGTTTCTCTTGAAGTATTGTACTCTACCCTTATGGACCTGATAAATTTGTGTAACGCTGGCGC
CCACCACTGACATCTATCTGAATATCCATGTAATATCACTTACTACCTTGTAGATTGGTCCTTTGCTTAGGCGAATGGAA
TCCTGTTGGCTGTTGCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7063.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis