Browse Element(s) Details


OsAffx.32184.1.S1_at

Description tigr:9640.m04352
TID=OsAffx.32184.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4416011/11HI0933-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44120NANA12+27338046..27338948transposon protein, putative, unclassified
LOC_Os12g44130Os.53455.1.S1_at11/1112+27341184..27343840expressed protein
LOC_Os12g44140Os.7063.1.S1_at11/1112+27345228..27348862expressed protein
LOC_Os12g44150Os.25634.1.S1_at11/1112+27353613..27360162Plasma membrane ATPase 1, putative, expressed
LOC_Os12g44160OsAffx.32184.1.S1_at11/1112+27360807..27364795HI0933-like protein, expressed
LOC_Os12g44160Os.39543.1.A1_at2/1112+27360807..27364795HI0933-like protein, expressed
LOC_Os12g44170Os.15760.2.S1_at10/1112+27364979..27369511pentatricopeptide, putative, expressed
LOC_Os12g44174Os.15760.1.S1_at11/1112+27369225..27369816expressed protein
LOC_Os12g44180Os.14785.1.S1_at11/1112+27373774..27377633expressed protein
LOC_Os12g44190Os.50620.1.S1_at11/1112+27378707..27380715ATPase 3, putative, expressed
LOC_Os12g44190OsAffx.25760.1.S1_x_at1/1112+27378707..27380715ATPase 3, putative, expressed
LOC_Os12g44200NANA12+27384508..27388587retrotransposon protein, putative, unclassified
LOC_Os12g44210Os.56885.1.S1_at11/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.32185.1.S1_s_at11/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.32185.1.S1_x_at2/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.25760.1.S1_x_at1/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32184.1.S1_at--276--1131Chr12:27362604..27362624 (21 bp)
AGTGCTCCTGAATTAACTCAGATTG
LOC_Os12g44160
OsAffx.32184.1.S1_at--900--8091Chr12:27362693..27362717 (25 bp)
GGACCTATGTTAGTTACACACTGGG
LOC_Os12g44160
OsAffx.32184.1.S1_at--1009--4871Chr12:27362719..27362743 (25 bp)
GCTTAGTGGGCCTGTTGTTCTTCGT
LOC_Os12g44160
OsAffx.32184.1.S1_at--676--7631Chr12:27362755..27362779 (25 bp)
GGGAGCACGTGAACTGCATCAGTAC
LOC_Os12g44160
OsAffx.32184.1.S1_at--301--5471Chr12:27362765..27362789 (25 bp)
GAACTGCATCAGTACAACTACCAAG
LOC_Os12g44160
OsAffx.32184.1.S1_at--335--2731Chr12:27363383..27363406 (24 bp)
AAGCAAAGCTCACCGTTGACTTCAT
LOC_Os12g44160
OsAffx.32184.1.S1_at--68--5691Chr12:27363399..27363423 (25 bp)
GACTTCATACCCGACATTCATATTG
LOC_Os12g44160
OsAffx.32184.1.S1_at--1084--5111Chr12:27363449..27363957 (25 bp)
GCACAAAGATCACCATGCGAGTTTA
LOC_Os12g44160
OsAffx.32184.1.S1_at--671--6691Chr12:27364366..27364390 (25 bp)
GTTCCTGAACTTGCAACACTCTGGA
LOC_Os12g44160
OsAffx.32184.1.S1_at--1126--5491Chr12:27364400..27364424 (25 bp)
GAACAATTGACCTTAGCATGACCGT
LOC_Os12g44160
OsAffx.32184.1.S1_at--249--3671Chr12:27364411..27364435 (25 bp)
CTTAGCATGACCGTGGTGCAGGTAC
LOC_Os12g44160
Target Sequence 
AGTGCTCCTGAATTAACTCAGATTGGACCTATGTTAGTTACACACTGGGGGCTTAGTGGGCCTGTTGTTCTTCGTTTGTC
CGCATGGGGAGCACGTGAACTGCATCAGTACAACTACCAAGCAAAGCTCACCGTTGACTTCATACCCGACATTCATATTG
AGGACGTGAAGCGCATCCTTTTCCTGCACAAAGATCACCATGCGAGTTTAGATGGTGATATGCACTGGGCGTCCATACCA
AATAATAATCTAAACACAGTAGCCCTTAGGTTAAAGCAATGGATGTTTGAGGTTGTCGCTAAGGGTCAATTCAAAGATGA
ATTTGTCACCGCCGGAGGTGTTCCACTTTCAGAGGAGAGGTATACATTTGTTCCTGAACTTGCAACACTCTGGATCAGCA
AGAGAACAATTGACCTTAGCATGACCGTGGTGCAGGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis