Browse Element(s) Details


OsAffx.17555.1.S1_at

Description tigr:9637.m00212
TID=OsAffx.17555.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0388011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03860Os.54634.1.S1_at1/119+1951557..1957218retrotransposon protein, putative, unclassified
LOC_Os09g03870Os.9209.2.S1_at11/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870Os.54774.1.S1_at2/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870Os.46314.1.S1_x_at2/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870Os.54774.1.S1_x_at2/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870OsAffx.25367.1.S1_at1/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870Os.52172.1.S1_x_at1/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870OsAffx.28492.1.S1_at1/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870Os.38751.1.A1_at1/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03880OsAffx.17555.1.S1_at11/119+1981104..1982035hypothetical protein
LOC_Os09g03890OsAffx.17556.1.S1_at11/119+1985009..1988544TPR Domain containing protein
LOC_Os09g03900Os.46012.3.S1_x_at3/119+1991384..1997508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g03900Os.54691.1.S1_x_at2/119+1991384..1997508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g03900Os.46012.2.S1_x_at2/119+1991384..1997508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g03900Os.27088.1.A1_x_at1/119+1991384..1997508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g03910NANA9+1999116..2000072hypothetical protein
LOC_Os09g03920NANA9+2001473..2003644retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03939OsAffx.29710.1.S1_x_at11/119+2006493..2020289ABC-2 type transporter family protein, expressed
LOC_Os09g03939Os.20772.1.S1_at11/119+2006493..2020289ABC-2 type transporter family protein, expressed
LOC_Os09g03939OsAffx.24773.1.S1_at1/119+2006493..2020289ABC-2 type transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17555.1.S1_at--562--4751Chr09:1981383..1981407 (25 bp)
GCTGATGTACAGCTCTTTCATGCCT
LOC_Os09g03880
OsAffx.17555.1.S1_at--74--3211Chr09:1981579..1981603 (25 bp)
CAATGTCTGGCTTGCTTCATTCAGA
LOC_Os09g03880
OsAffx.17555.1.S1_at--386--5331Chr09:1981619..1981643 (25 bp)
GAAGTCCTTCATGAGCTGGTACAAC
LOC_Os09g03880
OsAffx.17555.1.S1_at--938--931Chr09:1981645..1981669 (25 bp)
AGGAAGCTTACTACACCATGTTGAG
LOC_Os09g03880
OsAffx.17555.1.S1_at--207--6231Chr09:1981715..1981739 (25 bp)
GATGGCCTCTACTCTGCAAGAAGTG
LOC_Os09g03880
OsAffx.17555.1.S1_at--1131--2731Chr09:1981732..1981756 (25 bp)
AAGAAGTGCCTACCATGCCCAATTC
LOC_Os09g03880
OsAffx.17555.1.S1_at--725--6051Chr09:1981819..1981843 (25 bp)
GAGATTCCTGGGTTGGCTAATCCTA
LOC_Os09g03880
OsAffx.17555.1.S1_at--640--8311Chr09:1981833..1981857 (25 bp)
GGCTAATCCTACACCAGAAGACTTT
LOC_Os09g03880
OsAffx.17555.1.S1_at--569--3171Chr09:1981895..1981919 (25 bp)
AATTGGATTTGCCAGCTCTGCACAG
LOC_Os09g03880
OsAffx.17555.1.S1_at--428--6211Chr09:1981919..1981943 (25 bp)
GAGGCTTTTGAGGACACTGATCACC
LOC_Os09g03880
OsAffx.17555.1.S1_at--243--6451Chr09:1981937..1981961 (25 bp)
GATCACCTCTTCAGACAATGCAAAG
LOC_Os09g03880
Target Sequence 
GCTGATGTACAGCTCTTTCATGCCTGCACAAAGATCACCCTAGGTGGCAATCAGGTTGCGTCTAAAAAGGTGGCAATCAG
GAAAAACAGGCATGTCAAAACTGAATTTACAAACAATGTCTGGCTTGCTTCATTCAGACAAATAACAGACGTTGAAGTCC
TTCATGAGCTGGTACAACTAGGAAGCTTACTACACCATGTTGAGCTATTAGTGAATACTGAAGACAAGATTGAATGGACA
CAAACTACAGATGGCCTCTACTCTGCAAGAAGTGCCTACCATGCCCAATTCTTTGGAACTGAGAGAAACAAATCATTTAA
AATGATATGGACAGCTGAGGCGCAGTCAAAACAGAGATTCCTGGGTTGGCTAATCCTACACCAGAAGACTTTAACGGCTG
AGAACTTACTAATCAGACATTGGCCATGCAATTGGATTTGCCAGCTCTGCACAGAGGCTTTTGAGGACACTGATCACCTC
TTCAGACAATGCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis