Browse Element(s) Details


Os.9209.2.S1_at

Description gb:AK064272.1
DB_XREF= gi:32974290
TID=Os.9209.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9209 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0022D10.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-E09, full insert sequence.
FL= gb:AK064272.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0387011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g2022011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g0413011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g3521010/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g1840010/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g219609/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03820OsAffx.29322.1.S1_x_at3/119+1937703..1938074retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03830Os.27691.1.S1_x_at4/119+1938923..1943488retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03840Os.27691.2.S1_x_at1/119+1943739..1944482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03850OsAffx.6165.1.S1_at11/119+1948777..1951120hypothetical protein
LOC_Os09g03860Os.54634.1.S1_at1/119+1951557..1957218retrotransposon protein, putative, unclassified
LOC_Os09g03870Os.9209.2.S1_at11/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870Os.54774.1.S1_at2/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870Os.46314.1.S1_x_at2/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870Os.54774.1.S1_x_at2/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870OsAffx.25367.1.S1_at1/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870Os.52172.1.S1_x_at1/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870OsAffx.28492.1.S1_at1/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870Os.38751.1.A1_at1/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03880OsAffx.17555.1.S1_at11/119+1981104..1982035hypothetical protein
LOC_Os09g03890OsAffx.17556.1.S1_at11/119+1985009..1988544TPR Domain containing protein
LOC_Os09g03900Os.46012.3.S1_x_at3/119+1991384..1997508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g03900Os.54691.1.S1_x_at2/119+1991384..1997508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g03900Os.46012.2.S1_x_at2/119+1991384..1997508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g03900Os.27088.1.A1_x_at1/119+1991384..1997508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g03910NANA9+1999116..2000072hypothetical protein
LOC_Os09g03920NANA9+2001473..2003644retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9209.2.S1_at--805--14322Chr10:7922032..7922056 (25 bp)
AGAAGCTTCGGGACCTATTCGCATA
NONE
Os.9209.2.S1_at--199--27122Chr10:7922034..7922058 (25 bp)
AAGCTTCGGGACCTATTCGCATAGA
NONE
Os.9209.2.S1_at--65--15522Chr10:7922035..7922059 (25 bp)
AGCTTCGGGACCTATTCGCATAGAA
NONE
Os.9209.2.S1_at--1128--48922Chr10:7922036..7922060 (25 bp)
GCTTCGGGACCTATTCGCATAGAAC
NONE
Os.9209.2.S1_at--883--35922Chr10:7922037..7922061 (25 bp)
CTTCGGGACCTATTCGCATAGAACT
NONE
Os.9209.2.S1_at--757--106122Chr10:7922038..7922062 (25 bp)
TTCGGGACCTATTCGCATAGAACTT
NONE
Os.9209.2.S1_at--226--94322Chr10:7922039..7922063 (25 bp)
TCGGGACCTATTCGCATAGAACTTT
NONE
Os.9209.2.S1_at--1126--76118Chr10:7922041..7922065 (25 bp)
GGGACCTATTCGCATAGAACTTTGA
NONE
Os.9209.2.S1_at--804--80917Chr10:7922042..7922066 (25 bp)
GGACCTATTCGCATAGAACTTTGAA
NONE
Os.9209.2.S1_at--142--43124Chr10:7922045..7922069 (25 bp)
CCTATTCGCATAGAACTTTGAAAAA
NONE
Os.9209.2.S1_at--503--24124Chr10:7922067..7922091 (25 bp)
AAAATTCTACAAGCTTCATACTTTG
NONE
Target Sequence 
AGAAGCTTCGGGACCTATTCGCATAGAACTTTGAAAAAATTCTACAAGCTTCATACTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9209.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis