Browse Element(s) Details


OsAffx.6165.1.S1_at

Description tigr:9637.m00208
TID=OsAffx.6165.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0385011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03800OsAffx.6164.1.S1_at11/119+1924653..1927064hypothetical protein
LOC_Os09g03800OsAffx.31780.1.S1_at1/119+1924653..1927064hypothetical protein
LOC_Os09g03810OsAffx.29709.1.S1_at11/119+1931253..1931886hypothetical protein
LOC_Os09g03820OsAffx.29322.1.S1_x_at3/119+1937703..1938074retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03830Os.27691.1.S1_x_at4/119+1938923..1943488retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03840Os.27691.2.S1_x_at1/119+1943739..1944482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03850OsAffx.6165.1.S1_at11/119+1948777..1951120hypothetical protein
LOC_Os09g03860Os.54634.1.S1_at1/119+1951557..1957218retrotransposon protein, putative, unclassified
LOC_Os09g03870Os.9209.2.S1_at11/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870Os.54774.1.S1_at2/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870Os.46314.1.S1_x_at2/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870Os.54774.1.S1_x_at2/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870OsAffx.25367.1.S1_at1/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870Os.52172.1.S1_x_at1/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870OsAffx.28492.1.S1_at1/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870Os.38751.1.A1_at1/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6165.1.S1_at--506--5771Chr09:1949944..1949968 (25 bp)
GACGATGAGCCGGTCCCCATTGATA
LOC_Os09g03850
OsAffx.6165.1.S1_at--414--10791Chr09:1949963..1949987 (25 bp)
TTGATACCCCTGTGCCTGACATTGA
LOC_Os09g03850
OsAffx.6165.1.S1_at--724--2331Chr09:1950019..1950043 (25 bp)
AAAGATGGGTGGTCATCCCCGGTCA
LOC_Os09g03850
OsAffx.6165.1.S1_at--896--9291Chr09:1950034..1950058 (25 bp)
TCCCCGGTCATTATCCACTTGGATA
LOC_Os09g03850
OsAffx.6165.1.S1_at--632--2631Chr09:1950074..1950098 (25 bp)
AACCTCGGCCAATGTTGTATAAGCA
LOC_Os09g03850
OsAffx.6165.1.S1_at--658--711Chr09:1950122..1950146 (25 bp)
ATGATGATGTTTCTCATTCCCGCTC
LOC_Os09g03850
OsAffx.6165.1.S1_at--588--5691Chr09:1950194..1950218 (25 bp)
GACTAGATGAGGACCCAGATGGCAA
LOC_Os09g03850
OsAffx.6165.1.S1_at--875--6091Chr09:1950631..1950655 (25 bp)
GAGTCGAAGCGGCTATCATCTTCTC
LOC_Os09g03850
OsAffx.6165.1.S1_at--750--3691Chr09:1950643..1950667 (25 bp)
CTATCATCTTCTCGCCAGATGGTGA
LOC_Os09g03850
OsAffx.6165.1.S1_at--473--411Chr09:1950586..1951016 (25 bp)
ATCAGGTGTTTCAAGCAGCCACTCA
LOC_Os09g03850
OsAffx.6165.1.S1_at--989--1991Chr09:1951016..1951040 (25 bp)
ACTCCGCGGTCCCTCAAGATGATTG
LOC_Os09g03850
Target Sequence 
GACGATGAGCCGGTCCCCATTGATACCCCTGTGCCTGACATTGACCCCATGCACAACCCCCATCTTTCGGGGCCCAAAGA
TGGGTGGTCATCCCCGGTCATTATCCACTTGGATACCATAGAAGATCATCAACCTCGGCCAATGTTGTATAAGCAGTATG
AGTGGTCCTATGGGGCCTATGATGATGTTTCTCATTCCCGCTCGCGCCCTCTGCCTATTCCATGCAGGCAGGAGACCAGT
GCGGTGCAGGGACTAGATGAGGACCCAGATGGCAACGGCGGTCGCCCACACCCGCGTTACCGGAGCCGCTCTAGGGGGAC
CAGGGAAGCCAGGAGCAGCAAGAAGACCCCAAGAGAGTCGAAGCGGCTATCATCTTCTCGCCAGATGGTGATCAGGTGTT
TCAAGCAGCCACTCACTCCGCGGTCCCTCAAGATGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6165.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis