Browse Element(s) Details


OsAffx.29709.1.S1_at

Description tigr:9637.m00205
TID=OsAffx.29709.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0381011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03769NANA9+1911605..1912062NA
LOC_Os09g03780NANA9+1916710..1918670expressed protein
LOC_Os09g03790NANA9+1920818..1921186hypothetical protein
LOC_Os09g03800OsAffx.6164.1.S1_at11/119+1924653..1927064hypothetical protein
LOC_Os09g03800OsAffx.31780.1.S1_at1/119+1924653..1927064hypothetical protein
LOC_Os09g03810OsAffx.29709.1.S1_at11/119+1931253..1931886hypothetical protein
LOC_Os09g03820OsAffx.29322.1.S1_x_at3/119+1937703..1938074retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03830Os.27691.1.S1_x_at4/119+1938923..1943488retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03840Os.27691.2.S1_x_at1/119+1943739..1944482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03850OsAffx.6165.1.S1_at11/119+1948777..1951120hypothetical protein
LOC_Os09g03860Os.54634.1.S1_at1/119+1951557..1957218retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29709.1.S1_at--1126--2771Chr09:1931813..1931837 (25 bp)
AAGAGATTGCTGCTAAGGATGCACA
LOC_Os09g03810
OsAffx.29709.1.S1_at--245--9111Chr09:1931806..1931830 (25 bp)
TGCTGCTAAGGATGCACAGGACATA
LOC_Os09g03810
OsAffx.29709.1.S1_at--70--5971Chr09:1931553..1931793 (25 bp)
GATGAATTTAACTCTTGGTTGGACA
LOC_Os09g03810
OsAffx.29709.1.S1_at--871--9811Chr09:1931545..1931785 (25 bp)
TAACTCTTGGTTGGACAGGATGGAA
LOC_Os09g03810
OsAffx.29709.1.S1_at--499--851Chr09:1931526..1931550 (25 bp)
ATGGAAGCTATGGACAGCCAAGAGC
LOC_Os09g03810
OsAffx.29709.1.S1_at--2--3211Chr09:1931479..1931503 (25 bp)
CAAGGACATGTTTAACAGCCAGAAG
LOC_Os09g03810
OsAffx.29709.1.S1_at--53--5571Chr09:1931367..1931479 (25 bp)
GAAAGCTGCGATAAACAAGATTCAG
LOC_Os09g03810
OsAffx.29709.1.S1_at--390--5571Chr09:1931323..1931347 (25 bp)
GAAAGAGAACTGTGCTGAGCCCAAT
LOC_Os09g03810
OsAffx.29709.1.S1_at--94--5471Chr09:1931317..1931341 (25 bp)
GAACTGTGCTGAGCCCAATCTTGGG
LOC_Os09g03810
OsAffx.29709.1.S1_at--68--8931Chr09:1931308..1931332 (25 bp)
TGAGCCCAATCTTGGGCGCTGTGAT
LOC_Os09g03810
OsAffx.29709.1.S1_at--860--3611Chr09:1931298..1931322 (25 bp)
CTTGGGCGCTGTGATGAAATTTCAT
LOC_Os09g03810
Target Sequence 
AAGAGATTGCTGCTAAGGATGCACAGGACATAAGAAGACAAGCAGATGAATTTAACTCTTGGTTGGACAGGATGGAAGCT
ATGGACAGCCAAGAGCTGAAGCAGTACAAAGAACAAAACAAGGACATGTTTAACAGCCAGAAGAAAGCTGCGATAAACAA
GATTCAGCAGAAGGAGAAGAAGAAGAGAAAGAGAACTGTGCTGAGCCCAATCTTGGGCGCTGTGATGAAATTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29709.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis