Browse Element(s) Details


OsAffx.30654.1.S1_at

Description tigr:9638.m02931
TID=OsAffx.30654.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3350011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33470NANA10+17296222..17299299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33480Os.47463.1.S1_x_at5/1110+17303343..17307043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33480Os.14491.2.S1_x_at5/1110+17303343..17307043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33484NANA10+17307676..17309738hypothetical protein
LOC_Os10g33490OsAffx.8026.1.S1_at11/1110+17316753..17321232hypothetical protein
LOC_Os10g33500OsAffx.30654.1.S1_at11/1110+17322711..17331734hypothetical protein
LOC_Os10g33500OsAffx.8026.1.S1_at2/1110+17322711..17331734hypothetical protein
LOC_Os10g33500Os.20772.1.S1_at1/1110+17322711..17331734hypothetical protein
LOC_Os10g33500OsAffx.20940.1.S1_at1/1110+17322711..17331734hypothetical protein
LOC_Os10g33510OsAffx.18504.1.S1_at11/1110+17334698..17335884hypothetical protein
LOC_Os10g33520OsAffx.30655.2.S1_x_at11/1110+17343989..17346285GMC oxidoreductase family protein
LOC_Os10g33520OsAffx.30655.2.S1_at11/1110+17343989..17346285GMC oxidoreductase family protein
LOC_Os10g33530OsAffx.8024.1.S1_x_at11/1110+17347923..17348652hypothetical protein
LOC_Os10g33540Os.5644.1.S1_at11/1110+17353257..17355571GMC oxidoreductase family protein, expressed
LOC_Os10g33540OsAffx.30655.2.S1_x_at2/1110+17353257..17355571GMC oxidoreductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30654.1.S1_at--1100--6711Chr10:17327175..17327199 (25 bp)
GTTCTGGTTATGTCAAGTCCCGCAA
LOC_Os10g33500
OsAffx.30654.1.S1_at--723--2851Chr10:17327189..17327213 (25 bp)
AAGTCCCGCAAGAGGCTCCTAAAAG
LOC_Os10g33500
OsAffx.30654.1.S1_at--1062--211Chr10:17327444..17327468 (25 bp)
ATTTGGCCATATTGTCGAACCCAGC
LOC_Os10g33500
OsAffx.30654.1.S1_at--568--5431Chr10:17327482..17327506 (25 bp)
GAACCAGTGCTAGTGATGATCTTGA
LOC_Os10g33500
OsAffx.30654.1.S1_at--271--6531Chr10:17327505..17327529 (25 bp)
GATTTGTCTGACATTGTCGTCTCCC
LOC_Os10g33500
OsAffx.30654.1.S1_at--143--7291Chr10:17327900..17327924 (25 bp)
GTGCGCCTTCCTGATAATACAACTA
LOC_Os10g33500
OsAffx.30654.1.S1_at--431--10231Chr10:17327962..17327986 (25 bp)
TATTGTCACATGCTTGGGTCTCGAA
LOC_Os10g33500
OsAffx.30654.1.S1_at--712--7691Chr10:17327977..17328001 (25 bp)
GGGTCTCGAAGAGGTCAGTCCTATA
LOC_Os10g33500
OsAffx.30654.1.S1_at--837--8871Chr10:17328028..17328052 (25 bp)
TGATGGTAGTCCTCTTCTAGCTGCT
LOC_Os10g33500
OsAffx.30654.1.S1_at--144--6131Chr10:17328088..17328112 (25 bp)
GAGTGGGTCTGTTCATAGTGGCAAC
LOC_Os10g33500
OsAffx.30654.1.S1_at--624--1091Chr10:17328104..17328128 (25 bp)
AGTGGCAACACCTGGGTTCCTGATA
LOC_Os10g33500
Target Sequence 
GTTCTGGTTATGTCAAGTCCCGCAAGAGGCTCCTAAAAGTTTACGTTGAATATCAAAAGAGACTGAAGGCATTGGATGCT
TTTGAAAAAAATCAATGTGCTATTGAGGAGGAACGATTTGGTGAAGGTCTTTGTGATCGAGAAGTTTCGACCATTGCTTT
TAAAGAGGAATCATTTGGCCATATTGTCGAACCCAGCCAACAAACTTATCGAACCAGTGCTAGTGATGATCTTGATTTGT
CTGACATTGTCGTCTCCCTTGCTTTGTTTGATGTGCGCCTTCCTGATAATACAACTACTGATGGGTTCTTAGGACTATAT
GATCATGATATTGTTATTGTCACATGCTTGGGTCTCGAAGAGGTCAGTCCTATAGATTTTAATGGAACACCTGCCTGTCC
TGATGGTAGTCCTCTTCTAGCTGCTGGGCGTGCCTTCAAGTCAGGCAATTTAATGGCCATGAGTGGGTCTGTTCATAGTG
GCAACACCTGGGTTCCTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis