Browse Element(s) Details


OsAffx.30655.1.S1_s_at

Description tigr:9638.m02927
TID=OsAffx.30655.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative alcohol oxidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3346011/11GMC oxidoreductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33430NANA10+17271928..17272161hypothetical protein
LOC_Os10g33440OsAffx.18502.1.S1_at11/1110+17277212..17283556NB-ARC domain containing protein, expressed
LOC_Os10g33450OsAffx.18503.1.S1_at11/1110+17286836..17287819hypothetical protein
LOC_Os10g33460OsAffx.30655.1.S1_s_at11/1110+17289725..17294252GMC oxidoreductase family protein, expressed
LOC_Os10g33460OsAffx.8024.1.S1_x_at3/1110+17289725..17294252GMC oxidoreductase family protein, expressed
LOC_Os10g33460OsAffx.30655.2.S1_x_at1/1110+17289725..17294252GMC oxidoreductase family protein, expressed
LOC_Os10g33470NANA10+17296222..17299299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33480Os.47463.1.S1_x_at5/1110+17303343..17307043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33480Os.14491.2.S1_x_at5/1110+17303343..17307043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33484NANA10+17307676..17309738hypothetical protein
LOC_Os10g33490OsAffx.8026.1.S1_at11/1110+17316753..17321232hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009055molecular_functionelectron carrier activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30655.1.S1_s_at--194--2231Chr10:17290063..17290087 (25 bp)
ACAAGTGGGCGCTCCTTGCCTCGGC
LOC_Os10g33460
OsAffx.30655.1.S1_s_at--105--1111Chr10:17290060..17290084 (25 bp)
AGTGGGCGCTCCTTGCCTCGGCGCA
LOC_Os10g33460
OsAffx.30655.1.S1_s_at--683--8411Chr10:17289921..17289945 (25 bp)
GGCCGTCGGCGTCAACCCGATGATC
LOC_Os10g33460
OsAffx.30655.1.S1_s_at--30--4511Chr10:17289920..17289944 (25 bp)
GCCGTCGGCGTCAACCCGATGATCA
LOC_Os10g33460
OsAffx.30655.1.S1_s_at--298--4151Chr10:17289839..17289863 (25 bp)
CGCGCAGCGCGCTCAGTGGAAAACC
LOC_Os10g33460
OsAffx.30655.1.S1_s_at--976--4111Chr10:17289837..17289861 (25 bp)
CGCAGCGCGCTCAGTGGAAAACCGT
LOC_Os10g33460
OsAffx.30655.1.S1_s_at--322--5071Chr10:17289836..17289860 (25 bp)
GCAGCGCGCTCAGTGGAAAACCGTG
LOC_Os10g33460
OsAffx.30655.1.S1_s_at--714--1651Chr10:17289834..17289858 (25 bp)
AGCGCGCTCAGTGGAAAACCGTGAT
LOC_Os10g33460
OsAffx.30655.1.S1_s_at--527--4131Chr10:17289832..17289856 (25 bp)
CGCGCTCAGTGGAAAACCGTGATGT
LOC_Os10g33460
OsAffx.30655.1.S1_s_at--466--4131Chr10:17289830..17289854 (25 bp)
CGCTCAGTGGAAAACCGTGATGTGT
LOC_Os10g33460
OsAffx.30655.1.S1_s_at--399--3751Chr10:17289828..17289852 (25 bp)
CTCAGTGGAAAACCGTGATGTGTCC
LOC_Os10g33460
Target Sequence 
ACAAGTGGGCGCTCCTTGCCTCGGCGCACCAGATGGGGAGCTGCCGGATGGGGAGGAGCGCCAAGCACGGCGGCGTCGAC
GGCGGCGGCGAGAGCTGGGAGGCGGAGGGGCTGTACGTCTGCGACGGCAGCTTGCTCCCGACGGCCGTCGGCGTCAACCC
GATGATCACCATCGAGTCCGTGGCGTATTGCGTCGCCAAGGGCATCGCCGAGTCGCTCGCGTCGCGCGCAGCGCGCTCAG
TGGAAAACCGTGATGTGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30655.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis