Browse Element(s) Details


Os.53879.1.S1_at

Description gb:AK100577.1
DB_XREF= gi:32985786
TID=Os.53879.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53879 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023105H18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105H18, full insert sequence.
FL= gb:AK100577.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2682011/11Exo70 exocyst complex subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26780Os.48064.1.S1_at10/119+16272521..16274267ZIM motif family protein, expressed
LOC_Os09g26790OsAffx.8028.1.S1_x_at1/119+16279241..16279480hypothetical protein
LOC_Os09g26800Os.27736.1.S1_at11/119+16281842..16286188glycoside hydrolase family 28 protein, putative, expressed
LOC_Os09g26810Os.52535.1.S1_at11/119+16286915..16289735Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os09g26810Os.52535.1.S1_x_at10/119+16286915..16289735Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os09g26820Os.53879.1.S1_at11/119+16293641..16296109Exo70 exocyst complex subunit family protein, expressed
LOC_Os09g26830Os.11828.1.S1_at10/119+16299796..16303846Lung seven transmembrane receptor family protein, expressed
LOC_Os09g26830Os.11828.1.S2_at10/119+16299796..16303846Lung seven transmembrane receptor family protein, expressed
LOC_Os09g26840Os.52712.1.S1_at11/119+16306793..16309836expressed protein
LOC_Os09g26850NANA9+16318841..16319799hypothetical protein
LOC_Os09g26860OsAffx.17941.1.A1_s_at11/119+16320537..16322517hypothetical protein
LOC_Os09g26860OsAffx.17941.1.A1_at11/119+16320537..16322517hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53879.1.S1_at--39--5551Chr09:16295551..16295575 (25 bp)
GAAACTTCTTCCAGCATATCGATCC
LOC_Os09g26820
Os.53879.1.S1_at--523--251Chr09:16295566..16295590 (25 bp)
ATATCGATCCTTCCTTGGTCGGTTC
LOC_Os09g26820
Os.53879.1.S1_at--602--7191Chr09:16295583..16295607 (25 bp)
GTCGGTTCCGGCATCACATAGAGAA
LOC_Os09g26820
Os.53879.1.S1_at--701--6171Chr09:16295645..16295669 (25 bp)
GAGGACCTTGAGACGTCCGTCACAA
LOC_Os09g26820
Os.53879.1.S1_at--298--10311Chr09:16295671..16295695 (25 bp)
TTTCTTTGAGGGTTGTCCACCTTCG
LOC_Os09g26820
Os.53879.1.S1_at--780--7271Chr09:16295685..16295709 (25 bp)
GTCCACCTTCGCTACATAACAGGAG
LOC_Os09g26820
Os.53879.1.S1_at--142--6131Chr09:16295768..16295792 (25 bp)
GAGTGTGGTTGCCTAGTATTCTACA
LOC_Os09g26820
Os.53879.1.S1_at--1009--7051Chr09:16295886..16295910 (25 bp)
GTCAAATTCCTTAGTGGTTCTTCCT
LOC_Os09g26820
Os.53879.1.S1_at--941--6551Chr09:16295902..16295926 (25 bp)
GTTCTTCCTTTTATAGCCAACCTTG
LOC_Os09g26820
Os.53879.1.S1_at--178--4391Chr09:16295917..16295941 (25 bp)
GCCAACCTTGTTCGTTTGTTACACT
LOC_Os09g26820
Os.53879.1.S1_at--63--2571Chr09:16296041..16296064 (24 bp)
AACTGAGTGTCTTGTCACCTTTTTT
LOC_Os09g26820
Target Sequence 
GAAACTTCTTCCAGCATATCGATCCTTCCTTGGTCGGTTCCGGCATCACATAGAGAATGGAAGGCACCCAGAGTTGTACA
TCAAATACTCAGTTGAGGACCTTGAGACGTCCGTCACAAATTTCTTTGAGGGTTGTCCACCTTCGCTACATAACAGGAGA
AGATCCCATGGATGAGAGGTGGCTTGAAGACTCAAAAGATCTCTATTGTTGACTGATGAGTGTGGTTGCCTAGTATTCTA
CAATGCTTCGGGAAAAGCAAGACTTAANGGGTATAGTTGGTGATGATTTCTTCTACTAGAGGTAATCTGAAACAGGATCA
GGATCTTATTGAAACTGTCAAATTCCTTAGTGGTTCTTCCTTTTATAGCCAACCTTGTTCGTTTGTTACACTATCATCAT
ATCTTTTATGATTAGATTGTTCATATAGGNTCTGTTCTTTCANAATGTNTCGCAGTTGTAAGTTGTAACATCATGGNGTT
TNGTTTGACACTTAACTGAGTGTCTTGTCACCTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53879.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis