Browse Element(s) Details


Os.52535.1.S1_x_at

Description gb:AK067780.1
DB_XREF= gi:32977798
TID=Os.52535.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52535 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013114F21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013114F21, full insert sequence.
FL= gb:AK067780.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2681010/11Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26770Os.57123.1.S1_at11/119+16258677..16264873expressed protein
LOC_Os09g26770OsAffx.12764.1.S1_at8/119+16258677..16264873expressed protein
LOC_Os09g26770OsAffx.12764.2.S1_x_at4/119+16258677..16264873expressed protein
LOC_Os09g26770Os.12963.1.S1_at3/119+16258677..16264873expressed protein
LOC_Os09g26770OsAffx.12764.2.S1_at3/119+16258677..16264873expressed protein
LOC_Os09g26780Os.48064.1.S1_at10/119+16272521..16274267ZIM motif family protein, expressed
LOC_Os09g26790OsAffx.8028.1.S1_x_at1/119+16279241..16279480hypothetical protein
LOC_Os09g26800Os.27736.1.S1_at11/119+16281842..16286188glycoside hydrolase family 28 protein, putative, expressed
LOC_Os09g26810Os.52535.1.S1_at11/119+16286915..16289735Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os09g26810Os.52535.1.S1_x_at10/119+16286915..16289735Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os09g26820Os.53879.1.S1_at11/119+16293641..16296109Exo70 exocyst complex subunit family protein, expressed
LOC_Os09g26830Os.11828.1.S1_at10/119+16299796..16303846Lung seven transmembrane receptor family protein, expressed
LOC_Os09g26830Os.11828.1.S2_at10/119+16299796..16303846Lung seven transmembrane receptor family protein, expressed
LOC_Os09g26840Os.52712.1.S1_at11/119+16306793..16309836expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009768biological_processphotosynthesis, light harvesting in photosystem I
GO:0015979biological_processphotosynthesis
GO:0009782cellular_componentphotosystem I antenna complex
GO:0030076cellular_componentlight-harvesting complex
GO:0016168molecular_functionchlorophyll binding
GO:0031409molecular_functionpigment binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52535.1.S1_x_at--588--10631Chr09:16287882..16287906 (25 bp)
TTCGCGCAGGCGGAGCTGATGCACA
LOC_Os09g26810
Os.52535.1.S1_x_at--373--8011Chr09:16287974..16287998 (25 bp)
GGAGGACTACTCATGGATCGACGCC
LOC_Os09g26810
Os.52535.1.S1_x_at--871--10611Chr09:16288014..16288038 (25 bp)
TTCGCGGACCCGTGGACGCTGTTCG
LOC_Os09g26810
Os.52535.1.S1_x_at--689--8791Chr09:16288033..16288057 (25 bp)
TGTTCGTGTCGCAGATGGCACTGAT
LOC_Os09g26810
Os.52535.1.S1_x_at--745--7311Chr09:16288224..16288248 (25 bp)
GTGCTGCGCACCAAGGAGATCAAGA
LOC_Os09g26810
Os.52535.1.S1_x_at--390--1071Chr09:16288309..16288333 (25 bp)
AGGGCCCCATTGATAACCTCCTGCA
LOC_Os09g26810
Os.52535.1.S1_x_at--565--9011NONE
TGCAACGTCTTCTCGGCATTCACGT
NONE
Os.52535.1.S1_x_at--958--4912Chr09:16289660..16289684 (25 bp)
GCATTCACGTCCCATTGACGGGATT
LOC_Os09g26810
Os.52535.1.S1_x_at--333--3591Chr09:16289672..16289696 (25 bp)
CATTGACGGGATTAGAGTTTGGGAC
LOC_Os09g26810
Os.52535.1.S1_x_at--144--1352Chr09:16289685..16289709 (25 bp)
AGAGTTTGGGACGTTGCAGTCTACA
LOC_Os09g26810
Os.52535.1.S1_x_at--978--8631Chr09:16289691..16289715 (25 bp)
TGGGACGTTGCAGTCTACAGATGAA
LOC_Os09g26810
Target Sequence 
TTCGCGCAGGCGGAGCTGATGCACAGCCGGTGGGCGATGCTGGCGGTGGCGGGGATCCTGGTCCCGGAGGTGCTGGAGAA
ATGGGGGTTCATGGAGGACTACTCATGGATCGACGCCGGCGCGCGCGACTACTTCGCGGACCCGTGGACGCTGTTCGTGT
CGCAGATGGCACTGATGGGGTGGGCGGAGGGGCGGCGGTGGGCGGACTACCTCAACCCCGGGTGCGTCGCCGTCGAGCCG
CGGCTGCCCAACCGGAGGAACCCCGTGCCGGACGTCGGCTACCCCGGCGGGCTGTGGTTCGACTGGGGCAACTGGGGCCG
GGGATCGCCGGAGCCCGTCATGGTGCTGCGCACCAAGGAGATCAAGAACGGGAGGCTCGCCATGCTCGCCTTCGTGGGGT
TCTGGTTCCAGGCCGTCTACACCGGCGAGGGCCCCATTGATAACCTCCTGCATCACCTCGCCGACCCCGGCCACTGCAAC
GTCTTCTCGGCATTCACGTCCCATTGACGGGATTAGAGTTTGGGACGTTGCAGTCTACAGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52535.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis