Browse Element(s) Details


Os.57123.1.S1_at

Description gb:AK110960.1
DB_XREF= gi:32996169
TID=Os.57123.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-A11, full insert sequence.
FL= gb:AK110960.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2677011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26730Os.9366.1.S1_at10/119+16235628..1623979220 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os09g26730Os.16370.1.S1_at4/119+16235628..1623979220 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os09g26740NANA9+16244789..16245313retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g26750NANA9+16245598..16246799hypothetical protein
LOC_Os09g26760OsAffx.30045.1.S1_at11/119+16251172..16256557DNA repair metallo-beta-lactamase family protein
LOC_Os09g26770Os.57123.1.S1_at11/119+16258677..16264873expressed protein
LOC_Os09g26770OsAffx.12764.1.S1_at8/119+16258677..16264873expressed protein
LOC_Os09g26770OsAffx.12764.2.S1_x_at4/119+16258677..16264873expressed protein
LOC_Os09g26770Os.12963.1.S1_at3/119+16258677..16264873expressed protein
LOC_Os09g26770OsAffx.12764.2.S1_at3/119+16258677..16264873expressed protein
LOC_Os09g26780Os.48064.1.S1_at10/119+16272521..16274267ZIM motif family protein, expressed
LOC_Os09g26790OsAffx.8028.1.S1_x_at1/119+16279241..16279480hypothetical protein
LOC_Os09g26800Os.27736.1.S1_at11/119+16281842..16286188glycoside hydrolase family 28 protein, putative, expressed
LOC_Os09g26810Os.52535.1.S1_at11/119+16286915..16289735Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os09g26810Os.52535.1.S1_x_at10/119+16286915..16289735Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009294biological_processDNA mediated transformation
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57123.1.S1_at--962--9531Chr09:16264176..16264330 (25 bp)
TCTACCTCCTGAAATGGTCCTTTTT
LOC_Os09g26770
Os.57123.1.S1_at--1020--2952Chr09:16264318..16264342 (25 bp)
AATGGTCCTTTTTGAAGCGCCAAAG
LOC_Os09g26770
Os.57123.1.S1_at--835--4391Chr09:16264336..16264360 (25 bp)
GCCAAAGTGGCTGGCGCTGTCACCG
LOC_Os09g26770
Os.57123.1.S1_at--471--1491Chr09:16264391..16264415 (25 bp)
AGCACGCTAGAGTGGCTGGATCCGC
LOC_Os09g26770
Os.57123.1.S1_at--170--4031Chr09:16264436..16264460 (25 bp)
CGTACCTGGTTGCTTCAGAAGACAG
LOC_Os09g26770
Os.57123.1.S1_at--1160--10511Chr09:16264449..16264473 (25 bp)
TTCAGAAGACAGAGGCCGCCGGATC
LOC_Os09g26770
Os.57123.1.S1_at--800--4671Chr09:16264505..16264529 (25 bp)
GCGGTGGATTTGTGCGCCGCCATCC
LOC_Os09g26770
Os.57123.1.S1_at--212--2051Chr09:16264540..16264564 (25 bp)
ACTTTACCCTTTCCGACAGCATGGG
LOC_Os09g26770
Os.57123.1.S1_at--1038--6791Chr09:16264757..16264781 (25 bp)
GTTTACAACGCTATCCCTAGAAGTG
LOC_Os09g26770
Os.57123.1.S1_at--704--1092Chr11:26017817..26017837 (21 bp)
AGTGGAATTTTCTCTTCTTCGTATT
NONE
Os.57123.1.S1_at--71--3771Chr09:16264789..16264813 (25 bp)
CTCTTCTTCGTATTGTATTTCTGTG
LOC_Os09g26770
Target Sequence 
TCTACCTCCTGAAATGGTCCTTTTTGAAGCGCCAAAGTGGCTGGCGCTGTCACCGTGGCGGGGGCGGCGCTGAGGTGGCA
TGGGGAGCACGCTAGAGTGGCTGGATCCGCACGCCGTGGTCCTTCCCACTCGTACCTGGTTGCTTCAGAAGACAGAGGCC
GCCGGATCCGCGCGCCTCTGTCGCTCCCGAGGACGGGGGGCGGTGGATTTGTGCGCCGCCATCCTTGCCCCTACACTTTA
CCCTTTCCGACAGCATGGGGGTATGGAGGTGGAGCGGTGGTGACACAAGGATGTGCAACGGAGAGTGGGGGGAGGACGGA
CGACATCGGCGGCGGTGGGTGGAGGGCGGATGGCAGCGGGGGAGCACGGGCGCGAGTGGAGTGGCGGCCGCATGGGCTAG
GGTTTGGGGTAGATGTGGTTGTTTTTTCGAAACAGTCCCTTCCTTTTTTATGTTTACAACGCTATCCCTAGAAGTGGAAT
TTTCTCTTCTTCGTATTGTATTTCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis