Browse Element(s) Details


Os.56045.1.S1_at

Description gb:AK109168.1
DB_XREF= gi:32994377
TID=Os.56045.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56045 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-H03, full insert sequence.
FL= gb:AK109168.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g268809/11Aldehyde dehydrogenase family 7 member A1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26840Os.52712.1.S1_at11/119+16306793..16309836expressed protein
LOC_Os09g26850NANA9+16318841..16319799hypothetical protein
LOC_Os09g26860OsAffx.17941.1.A1_s_at11/119+16320537..16322517hypothetical protein
LOC_Os09g26860OsAffx.17941.1.A1_at11/119+16320537..16322517hypothetical protein
LOC_Os09g26870Os.8205.1.S1_at11/119+16324943..16328921BRCA1 C Terminus domain containing protein, expressed
LOC_Os09g26880Os.7932.1.S1_at10/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.56045.1.S1_at9/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880OsAffx.23696.1.S1_x_at2/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.12365.3.S1_x_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.17915.1.S1_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26890OsAffx.17915.1.S1_x_at11/119+16342797..16343120hypothetical protein
LOC_Os09g26900Os.5955.1.S1_at11/119+16346079..16346890Ctr copper transporter family protein, expressed
LOC_Os09g26910OsAffx.17916.1.S1_at11/119+16348802..16349264hypothetical protein
LOC_Os09g26920OsAffx.30049.1.S1_at11/119+16355736..16358508subtilase family protein, putative, expressed
LOC_Os09g26920OsAffx.30049.1.S1_x_at11/119+16355736..16358508subtilase family protein, putative, expressed
LOC_Os09g26930OsAffx.30050.1.S1_at11/119+16359213..16359760hypothetical protein
LOC_Os09g26940Os.55146.1.S1_at11/119+16360335..16362288Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009450biological_processgamma-aminobutyric acid catabolism
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0004028molecular_function3-chloroallyl aldehyde dehydrogenase activity
GO:0004777molecular_functionsuccinate-semialdehyde dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56045.1.S1_at--634--2171Chr09:16337174..16337198 (25 bp)
ACACGATCCGCTCGGTTCTAGGCGC
LOC_Os09g26880
Os.56045.1.S1_at--1131--10551Chr09:16337159..16337183 (25 bp)
TTCTAGGCGCTCGATTTGGTTTGGG
LOC_Os09g26880
Os.56045.1.S1_at--454--4751Chr09:16337151..16337175 (25 bp)
GCTCGATTTGGTTTGGGCCGCCCTG
LOC_Os09g26880
Os.56045.1.S1_at--829--6611Chr09:16337140..16337164 (25 bp)
TTTGGGCCGCCCTGGCATTTTTGGG
LOC_Os09g26880
Os.56045.1.S1_at--78--6811Chr09:16337069..16337093 (25 bp)
GTTTTGTGGTTTAGGTCATCGCGGA
LOC_Os09g26880
Os.56045.1.S1_at--679--1771Chr09:16336980..16337004 (25 bp)
ACCTGGATGGCGGTGAGTTTCACTT
LOC_Os09g26880
Os.56045.1.S1_at--758--4671Chr09:16336971..16336995 (25 bp)
GCGGTGAGTTTCACTTGACTTGCTG
LOC_Os09g26880
Os.56045.1.S1_at--347--5691Chr09:16336955..16336979 (25 bp)
GACTTGCTGTGTTGGAGTGCTGATA
LOC_Os09g26880
Os.56045.1.S1_at--726--6111NONE
GAGTGCTGATATCAATTCGTTTGGA
NONE
Os.56045.1.S1_at--364--6871NONE
GTTTGGATGATGAAGTGCTCGTACT
NONE
Os.56045.1.S1_at--636--9091Chr09:16336908..16336932 (25 bp)
TGCTCGTACTATGCTCTTGTGTGTC
LOC_Os09g26880
Target Sequence 
ACACGATCCGCTCGGTTCTAGGCGCTCGATTTGGTTTGGGCCGCCCTGGCATTTTTGGGGTGTGTGTGATTGTGGTGGAT
TTTGATGGGGGATTTTTTTTTGGGTGTTTTGTGGTTTAGGTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGA
GGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCGGTGAGTTTCACTTGACTTGCTGTGTTGGAGTGCT
GATATCAATTCGTTTGGATGATGAAGTGCTCGTACTATGCTCTTGTGTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis