Browse Element(s) Details


Os.5955.1.S1_at

Description gb:AK104963.1
DB_XREF= gi:32990172
TID=Os.5955.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5955 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-A12, full insert sequence.
FL= gb:AK104963.1 gb:AK069588.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2690011/11Ctr copper transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26860OsAffx.17941.1.A1_s_at11/119+16320537..16322517hypothetical protein
LOC_Os09g26860OsAffx.17941.1.A1_at11/119+16320537..16322517hypothetical protein
LOC_Os09g26870Os.8205.1.S1_at11/119+16324943..16328921BRCA1 C Terminus domain containing protein, expressed
LOC_Os09g26880Os.7932.1.S1_at10/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.56045.1.S1_at9/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880OsAffx.23696.1.S1_x_at2/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.12365.3.S1_x_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.17915.1.S1_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26890OsAffx.17915.1.S1_x_at11/119+16342797..16343120hypothetical protein
LOC_Os09g26900Os.5955.1.S1_at11/119+16346079..16346890Ctr copper transporter family protein, expressed
LOC_Os09g26910OsAffx.17916.1.S1_at11/119+16348802..16349264hypothetical protein
LOC_Os09g26920OsAffx.30049.1.S1_at11/119+16355736..16358508subtilase family protein, putative, expressed
LOC_Os09g26920OsAffx.30049.1.S1_x_at11/119+16355736..16358508subtilase family protein, putative, expressed
LOC_Os09g26930OsAffx.30050.1.S1_at11/119+16359213..16359760hypothetical protein
LOC_Os09g26940Os.55146.1.S1_at11/119+16360335..16362288Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0005375molecular_functioncopper ion transporter activity
GO:0015089molecular_functionhigh affinity copper ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5955.1.S1_at--805--4051Chr09:16346334..16346358 (25 bp)
CGAGGCGTTCCGGATCCGCGTCAAG
LOC_Os09g26900
Os.5955.1.S1_at--268--7591Chr09:16346580..16346604 (25 bp)
GGGCTACTTGGCGTTCCGCAGCAGC
LOC_Os09g26900
Os.5955.1.S1_at--875--9151Chr09:16346638..16346662 (25 bp)
TGCGCCTGCGCCTAGGGTTTGGCTT
LOC_Os09g26900
Os.5955.1.S1_at--1134--10071Chr09:16346650..16346674 (25 bp)
TAGGGTTTGGCTTTGCGGCTGCCCC
LOC_Os09g26900
Os.5955.1.S1_at--1106--7531Chr09:16346680..16346704 (25 bp)
GTGGCTCCTCTGTTTGGTTTCCCGA
LOC_Os09g26900
Os.5955.1.S1_at--895--6851Chr09:16346691..16346715 (25 bp)
GTTTGGTTTCCCGATCTTGTATGAC
LOC_Os09g26900
Os.5955.1.S1_at--154--3891Chr09:16346730..16346754 (25 bp)
CTGTGTACAAATTCAATTGCGTGAC
LOC_Os09g26900
Os.5955.1.S1_at--922--7911Chr09:16346759..16346783 (25 bp)
GGATTCCGGTGTTTCTGTAATTTGG
LOC_Os09g26900
Os.5955.1.S1_at--802--2671Chr09:16346811..16346835 (25 bp)
AAGCTGCTACTTTTGTGTTTCCAAC
LOC_Os09g26900
Os.5955.1.S1_at--556--10831Chr09:16346823..16346847 (25 bp)
TTGTGTTTCCAACCAATTGATGCAT
LOC_Os09g26900
Os.5955.1.S1_at--1123--3231Chr09:16346832..16346856 (25 bp)
CAACCAATTGATGCATTGATGCCTT
LOC_Os09g26900
Target Sequence 
CGAGGCGTTCCGGATCCGCGTCAAGNTCCTCGCGGGCGCCAAGCCGGCCTCCATCCCGCCCCCGGCGTCCTCCGACGCCG
CGCGGGCCCCGCTCCTCCTCCCCTCGTCCGCCGCCGGACGCTGGCCGGCGCGGCTGGCGACGGCCGGGCTGTTCGGGGTG
AACTCCGGCCTGGGCTACCTCCTCATGCTCGCCGTCATGTCGTTCAACGGCGGGGTGTTCGTCGCCGTGGTCGTCGGGCT
CGCGGCGGGCTACTTGGCGTTCCGCAGCAGCGACGGCGAGGACCTCGTCGTGGTCGACAACCCCTGCGCCTGCGCCTAGG
GTTTGGCTTTGCGGCTGCCCCCAGGTGTGGCTCCTCTGTTTGGTTTCCCGATCTTGTATGACAAGTAGAAATAAATCTGT
GTACAAATTCAATTGCGTGACAGGGGGATTCCGGTGTTTCTGTAATTTGGGGGGAAATTGTAGAGTACAAAATGAGAAAG
CTGCTACTTTTGTGTTTCCAACCAATTGATGCATTGATGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis