Browse Element(s) Details


OsAffx.17916.1.S1_at

Description tigr:9637.m02353
TID=OsAffx.17916.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2691011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26870Os.8205.1.S1_at11/119+16324943..16328921BRCA1 C Terminus domain containing protein, expressed
LOC_Os09g26880Os.7932.1.S1_at10/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.56045.1.S1_at9/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880OsAffx.23696.1.S1_x_at2/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.12365.3.S1_x_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.17915.1.S1_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26890OsAffx.17915.1.S1_x_at11/119+16342797..16343120hypothetical protein
LOC_Os09g26900Os.5955.1.S1_at11/119+16346079..16346890Ctr copper transporter family protein, expressed
LOC_Os09g26910OsAffx.17916.1.S1_at11/119+16348802..16349264hypothetical protein
LOC_Os09g26920OsAffx.30049.1.S1_at11/119+16355736..16358508subtilase family protein, putative, expressed
LOC_Os09g26920OsAffx.30049.1.S1_x_at11/119+16355736..16358508subtilase family protein, putative, expressed
LOC_Os09g26930OsAffx.30050.1.S1_at11/119+16359213..16359760hypothetical protein
LOC_Os09g26940Os.55146.1.S1_at11/119+16360335..16362288Cytochrome P450 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17916.1.S1_at--1009--4691Chr09:16349187..16349211 (25 bp)
GCGGCGCAGGACGTTCTTCCTTTGG
LOC_Os09g26910
OsAffx.17916.1.S1_at--976--8371Chr09:16349185..16349209 (25 bp)
GGCGCAGGACGTTCTTCCTTTGGCT
LOC_Os09g26910
OsAffx.17916.1.S1_at--361--4771Chr09:16349157..16349181 (25 bp)
GCTGCTGAGGTCGCGGCGCGCTCTG
LOC_Os09g26910
OsAffx.17916.1.S1_at--1013--4131Chr09:16349131..16349155 (25 bp)
CGCGGCTCAGGGAGTACTACGCCGA
LOC_Os09g26910
OsAffx.17916.1.S1_at--818--8311Chr09:16349128..16349152 (25 bp)
GGCTCAGGGAGTACTACGCCGAGAT
LOC_Os09g26910
OsAffx.17916.1.S1_at--40--3751Chr09:16349126..16349150 (25 bp)
CTCAGGGAGTACTACGCCGAGATGA
LOC_Os09g26910
OsAffx.17916.1.S1_at--1082--9631Chr09:16349125..16349149 (25 bp)
TCAGGGAGTACTACGCCGAGATGAT
LOC_Os09g26910
OsAffx.17916.1.S1_at--381--6091Chr09:16349120..16349144 (25 bp)
GAGTACTACGCCGAGATGATGAGGC
LOC_Os09g26910
OsAffx.17916.1.S1_at--1069--3711Chr09:16349115..16349139 (25 bp)
CTACGCCGAGATGATGAGGCGGCTC
LOC_Os09g26910
OsAffx.17916.1.S1_at--789--4231Chr09:16349110..16349134 (25 bp)
CCGAGATGATGAGGCGGCTCGTCGC
LOC_Os09g26910
OsAffx.17916.1.S1_at--88--8371Chr09:16348996..16349019 (24 bp)
GGCGGTGGCGCGCATGGTGCTGAGA
LOC_Os09g26910
Target Sequence 
GCGGCGCAGGACGTTCTTCCTTTGGCTGCTGCTGCTGAGGTCGCGGCGCGCTCTGGCGCGGCTCAGGGAGTACTACGCCG
AGATGATGAGGCGGCTCGTCGCCGAGGCGGCGGCGCTGGAGCCCGCGCCGGCGAAGTCGCGGGGCGGCGCTATCGGCGCG
GCGCCGGCGAGGTCGGCGGCCGTCGTGCCCGCGGCGGTGGCGCGCATGGTGCTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis