Browse Element(s) Details


OsAffx.17915.1.S1_x_at

Description tigr:9637.m02351
TID=OsAffx.17915.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2689011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26850NANA9+16318841..16319799hypothetical protein
LOC_Os09g26860OsAffx.17941.1.A1_s_at11/119+16320537..16322517hypothetical protein
LOC_Os09g26860OsAffx.17941.1.A1_at11/119+16320537..16322517hypothetical protein
LOC_Os09g26870Os.8205.1.S1_at11/119+16324943..16328921BRCA1 C Terminus domain containing protein, expressed
LOC_Os09g26880Os.7932.1.S1_at10/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.56045.1.S1_at9/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880OsAffx.23696.1.S1_x_at2/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.12365.3.S1_x_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.17915.1.S1_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26890OsAffx.17915.1.S1_x_at11/119+16342797..16343120hypothetical protein
LOC_Os09g26900Os.5955.1.S1_at11/119+16346079..16346890Ctr copper transporter family protein, expressed
LOC_Os09g26910OsAffx.17916.1.S1_at11/119+16348802..16349264hypothetical protein
LOC_Os09g26920OsAffx.30049.1.S1_at11/119+16355736..16358508subtilase family protein, putative, expressed
LOC_Os09g26920OsAffx.30049.1.S1_x_at11/119+16355736..16358508subtilase family protein, putative, expressed
LOC_Os09g26930OsAffx.30050.1.S1_at11/119+16359213..16359760hypothetical protein
LOC_Os09g26940Os.55146.1.S1_at11/119+16360335..16362288Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17915.1.S1_x_at--625--3751Chr09:16342847..16342871 (25 bp)
CTCTCTCGGCATCGACCCGGGTGAG
LOC_Os09g26890
OsAffx.17915.1.S1_x_at--533--9511Chr09:16342850..16342874 (25 bp)
TCTCGGCATCGACCCGGGTGAGCTC
LOC_Os09g26890
OsAffx.17915.1.S1_x_at--295--3551Chr09:16342856..16342880 (25 bp)
CATCGACCCGGGTGAGCTCGCTGGC
LOC_Os09g26890
OsAffx.17915.1.S1_x_at--543--1791Chr09:16342861..16342885 (25 bp)
ACCCGGGTGAGCTCGCTGGCCTCGA
LOC_Os09g26890
OsAffx.17915.1.S1_x_at--620--1731Chr09:16342896..16342920 (25 bp)
ACCATCGATGTCATGCGCGAGCGCG
LOC_Os09g26890
OsAffx.17915.1.S1_x_at--165--4651Chr09:16342918..16342942 (25 bp)
GCGTCGAGTTCCTACATTCCCTCAA
LOC_Os09g26890
OsAffx.17915.1.S1_x_at--121--4011Chr09:16342919..16342943 (25 bp)
CGTCGAGTTCCTACATTCCCTCAAG
LOC_Os09g26890
OsAffx.17915.1.S1_x_at--633--7171Chr09:16342920..16342944 (25 bp)
GTCGAGTTCCTACATTCCCTCAAGC
LOC_Os09g26890
OsAffx.17915.1.S1_x_at--164--9891Chr09:16342930..16342954 (25 bp)
TACATTCCCTCAAGCGCGTCGAGTT
LOC_Os09g26890
OsAffx.17915.1.S1_x_at--858--4455Chr09:16343045..16343069 (25 bp)
GCCTCTCGGCCTTGTCGGCAGCAGT
LOC_Os09g26890
OsAffx.17915.1.S1_x_at--675--5051Chr09:16343062..16343086 (25 bp)
GCAGCAGTGGCGTCGTCCTCCACTG
LOC_Os09g26890
Target Sequence 
CTCTCTCGGCATCGACCCGGGTGAGCTCGCTGGCCTCGAGCTCCACGCCACCATCGATGTCATGCGCGAGCGCGTCGAGT
TCCTACATTCCCTCAAGCGCGTCGAGTTCCTGCACTCCCTCGGCCTCTCCGCACGACGTGACGATGGAGGGGATATCTAC
CCCCGCCGGCCGCACGCCGCTCCTGCCCCCGTCTCCGCGCCTCTCGGCCTTGTCGGCAGCAGTGGCGTCGTCCTCCACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17915.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis