Browse Element(s) Details


Os.7932.1.S1_at

Description gb:AF323586.1
DB_XREF= gi:11995456
GEN=ALDH
TID=Os.7932.1
CNT=117
FEA=FLmRNA
TIER=FL+Stack
STK=41
UG=Os.7932 (NCBI UniGene Cluster)
DEF=Oryza sativa aldehyde dehydrogenase (ALDH) mRNA, complete cds.
PROD=aldehyde dehydrogenase
FL= gb:AK060757.1 gb:AK120185.1 gb:AF323586.1 gb:AK119560.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2688010/11Aldehyde dehydrogenase family 7 member A1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26840Os.52712.1.S1_at11/119+16306793..16309836expressed protein
LOC_Os09g26850NANA9+16318841..16319799hypothetical protein
LOC_Os09g26860OsAffx.17941.1.A1_s_at11/119+16320537..16322517hypothetical protein
LOC_Os09g26860OsAffx.17941.1.A1_at11/119+16320537..16322517hypothetical protein
LOC_Os09g26870Os.8205.1.S1_at11/119+16324943..16328921BRCA1 C Terminus domain containing protein, expressed
LOC_Os09g26880Os.7932.1.S1_at10/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.56045.1.S1_at9/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880OsAffx.23696.1.S1_x_at2/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.12365.3.S1_x_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.17915.1.S1_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26890OsAffx.17915.1.S1_x_at11/119+16342797..16343120hypothetical protein
LOC_Os09g26900Os.5955.1.S1_at11/119+16346079..16346890Ctr copper transporter family protein, expressed
LOC_Os09g26910OsAffx.17916.1.S1_at11/119+16348802..16349264hypothetical protein
LOC_Os09g26920OsAffx.30049.1.S1_at11/119+16355736..16358508subtilase family protein, putative, expressed
LOC_Os09g26920OsAffx.30049.1.S1_x_at11/119+16355736..16358508subtilase family protein, putative, expressed
LOC_Os09g26930OsAffx.30050.1.S1_at11/119+16359213..16359760hypothetical protein
LOC_Os09g26940Os.55146.1.S1_at11/119+16360335..16362288Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009450biological_processgamma-aminobutyric acid catabolism
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0004028molecular_function3-chloroallyl aldehyde dehydrogenase activity
GO:0004777molecular_functionsuccinate-semialdehyde dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7932.1.S1_at--164--6611Chr09:16331921..16331940 (20 bp)
GATTGGGCCTCATGGTAGTGACTGT
LOC_Os09g26880
Os.7932.1.S1_at--186--6131NONE
GAGGGCCACTTGTACGATCAACTAT
NONE
Os.7932.1.S1_at--884--2671Chr09:16329450..16329474 (25 bp)
AAGCGAGCTGCCTCTAGCACAAGGA
LOC_Os09g26880
Os.7932.1.S1_at--521--1231Chr09:16329412..16329436 (25 bp)
AGTTCGGTGGTCAAGATCGGCTGAT
LOC_Os09g26880
Os.7932.1.S1_at--9--6771Chr09:16329381..16329405 (25 bp)
GTTAAGCTTCATCGACAGACTTCAG
LOC_Os09g26880
Os.7932.1.S1_at--227--931Chr09:16329358..16329382 (25 bp)
AGGAATTTCTACTGGCGTCAACTGA
LOC_Os09g26880
Os.7932.1.S1_at--529--1791Chr09:16329331..16329355 (25 bp)
ACCGAAACTTCAACGCAGCAGCATT
LOC_Os09g26880
Os.7932.1.S1_at--488--3411Chr09:16329316..16329340 (25 bp)
CAGCAGCATTGCTATGTGTGCATAT
LOC_Os09g26880
Os.7932.1.S1_at--785--3011Chr09:16329269..16329293 (25 bp)
AATGCATGTACTGCTCTTGCTATGA
LOC_Os09g26880
Os.7932.1.S1_at--526--6531Chr09:16329246..16329270 (25 bp)
GATTAGCCGTCGGAGTTCGAGTCCA
LOC_Os09g26880
Os.7932.1.S1_at--561--2451Chr09:16329210..16329234 (25 bp)
AAAATTGCGTATTCCCTGATCGGTT
LOC_Os09g26880
Target Sequence 
GATTGGGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGGTGCTGAAATTGGTGGAGCTTTTG
GTGGAGAAAAAGCTACTGGTGGTGGACGAGAAGCAGGGAGTGATTCGTGGAAGCAGTACATGAGGAGGGCCACTTGTACG
ATCAACTATGGAAGCGAGCTGCCTCTAGCACAAGGAATAAATTTTGGCTAGTTCGGTGGTCAAGATCGGCTGATGAACAT
GTTAAGCTTCATCGACAGACTTCAGGAATTTCTACTGGCGTCAACTGAAAACCGAAACTTCAACGCAGCAGCATTGCTAT
GTGTGCATATAATAAGAGATGAGTCCAATATTAATGCATGTACTGCTCTTGCTATGATTAGCCGTCGGAGTTCGAGTCCA
ATAAACAGGGAAAAATTGCGTATTCCCTGATCGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis