Browse Element(s) Details


Os.17915.1.S1_at

Description gb:AK072153.1
DB_XREF= gi:32982176
TID=Os.17915.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17915 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132I15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132I15, full insert sequence.
FL= gb:AK072153.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1729011/11phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os09g268801/11Aldehyde dehydrogenase family 7 member A1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17240OsAffx.10637.1.S1_s_at11/116+9984252..9987938transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17240OsAffx.10637.3.S1_s_at11/116+9984252..9987938transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17240OsAffx.10637.4.S1_s_at8/116+9984252..9987938transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17250NANA6+9990834..9992306glucosyltransferase, putative
LOC_Os06g17260OsAffx.27683.1.S1_at10/116+9995898..9997325UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g17270OsAffx.15471.1.S1_at11/116+9999558..9999839hypothetical protein
LOC_Os06g17280Os.53666.1.S1_s_at11/116+10002547..10005954PHD-finger family protein, expressed
LOC_Os06g17280Os.53666.1.S1_x_at11/116+10002547..10005954PHD-finger family protein, expressed
LOC_Os06g17290Os.17915.1.S1_at11/116+10012886..10016979phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os06g17300OsAffx.4860.1.S1_at11/116+10022892..10023125hypothetical protein
LOC_Os06g17309Os.52772.1.S1_at1/116+10032485..10034342NA
LOC_Os06g17320Os.47463.1.S1_x_at5/116+10037190..10038184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17320Os.14491.2.S1_x_at4/116+10037190..10038184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17330NANA6+10038369..10040890transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009450biological_processgamma-aminobutyric acid catabolism
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0004028molecular_function3-chloroallyl aldehyde dehydrogenase activity
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
GO:0004777molecular_functionsuccinate-semialdehyde dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17915.1.S1_at--579--1091Chr06:10013455..10013479 (25 bp)
AGTGGCTCCCAGGTTGGCAACTGGA
LOC_Os06g17290
Os.17915.1.S1_at--664--1131Chr06:10013404..10013428 (25 bp)
AGTGCGAGCTTCGTCAAGCTGGCCG
LOC_Os06g17290
Os.17915.1.S1_at--82--6411Chr06:10013373..10013397 (25 bp)
GATCGGAGACATGGGCGCTATTCCT
LOC_Os06g17290
Os.17915.1.S1_at--752--8391Chr06:10013360..10013384 (25 bp)
GGCGCTATTCCTCGAGAAGTTCCAG
LOC_Os06g17290
Os.17915.1.S1_at--968--5231Chr06:10013219..10013243 (25 bp)
GAATACTTGTGGTTTGGCTGCTGCT
LOC_Os06g17290
Os.17915.1.S1_at--909--8651Chr06:10013187..10013211 (25 bp)
TGTGGCTTTCTTGCAGGTGTTCGAG
LOC_Os06g17290
Os.17915.1.S1_at--544--3471Chr06:10013174..10013198 (25 bp)
CAGGTGTTCGAGCTATGCAGCTGTA
LOC_Os06g17290
Os.17915.1.S1_at--486--4431Chr06:10013141..10013165 (25 bp)
GCCATCCTTTTACAGGCTTGCAATA
LOC_Os06g17290
Os.17915.1.S1_at--503--8911Chr06:10013111..10013135 (25 bp)
TGAGCAACAACTGCTATCGCCTGTG
LOC_Os06g17290
Os.17915.1.S1_at--529--3891Chr06:10013091..10013115 (25 bp)
CTGTGCCAGAGGTCCATGTTGTGAT
LOC_Os06g17290
Os.17915.1.S1_at--910--4332Chr09:16335856..16336043 (25 bp)
CCAGTTCTTCCACTCATGATATGCA
LOC_Os09g26880
Target Sequence 
AGTGGCTCCCAGGTTGGCAACTGGAGGAGTGCANATGAGCAACTTCCGACNAGTGCGAGCTTCGTCAAGCTGGCCGACAT
GGGATCGGAGACATGGGCGCTATTCCTCGAGAAGTTCCAGGAGCTCCTTCCCGAGGCATTCCGCTCGCGCAAGTGCGGCN
CNGCGGGGCAAAGGGCAAGNCAGAGGCTTGGCACTTCTTGCCAGTTTTGAGTTAGCGCNAGGAGTAGGGGAGGTGAAGAA
TACTTGTGGTTTGGCTGCTGCTGTTTGGTTGTGGCTTTCTTGCAGGTGTTCGAGCTATGCAGCTGTAGAATAAAAGCCAT
CCTTTTACAGGCTTGCAATAGGGTTTGAGCAACAACTGCTATCGCCTGTGCCAGAGGTCCATGTTGTGATGATGNCCTTT
TTTCTGTACATAATCTTTTTATTTTCTTCTTTTTTTTCTTTTCTAGTTAGACATGAGTTGCTTGAAGGAAGTTGGGATGA
TCAGCCTGCCCAGTCATTGGCCGCCCAGTTCTTCCACTCATGATATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis