Browse Element(s) Details


OsAffx.30050.1.S1_at

Description tigr:9637.m02355
TID=OsAffx.30050.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2693011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26880Os.7932.1.S1_at10/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.56045.1.S1_at9/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880OsAffx.23696.1.S1_x_at2/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.12365.3.S1_x_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.17915.1.S1_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26890OsAffx.17915.1.S1_x_at11/119+16342797..16343120hypothetical protein
LOC_Os09g26900Os.5955.1.S1_at11/119+16346079..16346890Ctr copper transporter family protein, expressed
LOC_Os09g26910OsAffx.17916.1.S1_at11/119+16348802..16349264hypothetical protein
LOC_Os09g26920OsAffx.30049.1.S1_at11/119+16355736..16358508subtilase family protein, putative, expressed
LOC_Os09g26920OsAffx.30049.1.S1_x_at11/119+16355736..16358508subtilase family protein, putative, expressed
LOC_Os09g26930OsAffx.30050.1.S1_at11/119+16359213..16359760hypothetical protein
LOC_Os09g26940Os.55146.1.S1_at11/119+16360335..16362288Cytochrome P450 family protein, expressed
LOC_Os09g26950OsAffx.6411.1.S1_at11/119+16375962..16376279cytochrome P450 monooxygenase CYP92A1, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30050.1.S1_at--618--10571Chr09:16359244..16359268 (25 bp)
TTCTCTTTGCTGCTACCGGTCCTTT
LOC_Os09g26930
OsAffx.30050.1.S1_at--521--8951Chr09:16359361..16359385 (25 bp)
TGACAGTCGCTAGTGTGGAGGACAT
LOC_Os09g26930
OsAffx.30050.1.S1_at--583--8131Chr09:16359380..16359404 (25 bp)
GGACATGACCGAAGGAGTCTCCCTA
LOC_Os09g26930
OsAffx.30050.1.S1_at--737--8031Chr09:16359393..16359417 (25 bp)
GGAGTCTCCCTAGAAGAGGAACATT
LOC_Os09g26930
OsAffx.30050.1.S1_at--880--10471Chr09:16359442..16359466 (25 bp)
TTAAAGGCGGTGACAGTGAAGTTGC
LOC_Os09g26930
OsAffx.30050.1.S1_at--1158--5331Chr09:16359459..16359483 (25 bp)
GAAGTTGCTGTCAAGGTCTCGAATG
LOC_Os09g26930
OsAffx.30050.1.S1_at--658--8031Chr09:16359488..16359512 (25 bp)
GGAGTGTATGTTGCTCTACCTCCAT
LOC_Os09g26930
OsAffx.30050.1.S1_at--649--9971Chr09:16359504..16359528 (25 bp)
TACCTCCATGAAGGCGTCCACATGA
LOC_Os09g26930
OsAffx.30050.1.S1_at--315--8371Chr09:16359516..16359540 (25 bp)
GGCGTCCACATGATCAAGCTTGAAT
LOC_Os09g26930
OsAffx.30050.1.S1_at--941--971Chr09:16359652..16359676 (25 bp)
AGGAGACGTAGATAGCGACAACATT
LOC_Os09g26930
OsAffx.30050.1.S1_at--389--1651Chr09:16359665..16359689 (25 bp)
AGCGACAACATTGGTGGCAGTGATG
LOC_Os09g26930
Target Sequence 
TTCTCTTTGCTGCTACCGGTCCTTTCCCCTTGCTTGGTGGGGAAGTGGAGAGAGTAGGTGGCGACGAAGGTGCGGTTGAG
GAAGACGTAGTCAGTGAGGAGGTGGAAGAGGGGCAAGTGACAGTCGCTAGTGTGGAGGACATGACCGAAGGAGTCTCCCT
AGAAGAGGAACATTACGGTGCTGGGGAAGTGGCTGGCTTTAAAGGCGGTGACAGTGAAGTTGCTGTCAAGGTCTCGAATG
ACCAGGAGTGTATGTTGCTCTACCTCCATGAAGGCGTCCACATGATCAAGCTTGAATTGGGGTGGGAAGATGTGGTGAAC
GATGAGGATGGTGAGGCAGGAGACGTAGATAGCGACAACATTGGTGGCAGTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis