Browse Element(s) Details


OsAffx.30049.1.S1_x_at

Description tigr:9637.m02354
TID=OsAffx.30049.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PA domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2692011/11subtilase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26880Os.7932.1.S1_at10/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.56045.1.S1_at9/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880OsAffx.23696.1.S1_x_at2/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.12365.3.S1_x_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.17915.1.S1_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26890OsAffx.17915.1.S1_x_at11/119+16342797..16343120hypothetical protein
LOC_Os09g26900Os.5955.1.S1_at11/119+16346079..16346890Ctr copper transporter family protein, expressed
LOC_Os09g26910OsAffx.17916.1.S1_at11/119+16348802..16349264hypothetical protein
LOC_Os09g26920OsAffx.30049.1.S1_at11/119+16355736..16358508subtilase family protein, putative, expressed
LOC_Os09g26920OsAffx.30049.1.S1_x_at11/119+16355736..16358508subtilase family protein, putative, expressed
LOC_Os09g26930OsAffx.30050.1.S1_at11/119+16359213..16359760hypothetical protein
LOC_Os09g26940Os.55146.1.S1_at11/119+16360335..16362288Cytochrome P450 family protein, expressed
LOC_Os09g26950OsAffx.6411.1.S1_at11/119+16375962..16376279cytochrome P450 monooxygenase CYP92A1, putative

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009827biological_processcell wall modification (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30049.1.S1_x_at--1083--5751Chr09:16358151..16358175 (25 bp)
GACGTGCCAGCGGAAGCTGTCCAGC
LOC_Os09g26920
OsAffx.30049.1.S1_x_at--879--10551Chr09:16358200..16358224 (25 bp)
TTCTCCGTCGTGTTCGGCCGGCGGT
LOC_Os09g26920
OsAffx.30049.1.S1_x_at--202--3371Chr09:16358244..16358268 (25 bp)
CACCGTCAAGTACCGGCGCGAGCTG
LOC_Os09g26920
OsAffx.30049.1.S1_x_at--790--5891Chr09:16358263..16358287 (25 bp)
GAGCTGACCAACGTCGGCGACGGCA
LOC_Os09g26920
OsAffx.30049.1.S1_x_at--205--7391Chr09:16358293..16358317 (25 bp)
GTGTACACCGCGAGGGTCACCGGGC
LOC_Os09g26920
OsAffx.30049.1.S1_x_at--485--7071Chr09:16358308..16358332 (25 bp)
GTCACCGGGCCGAGCGACATAGCCG
LOC_Os09g26920
OsAffx.30049.1.S1_x_at--271--1651Chr09:16358320..16358344 (25 bp)
AGCGACATAGCCGTGGCCGTGAAGC
LOC_Os09g26920
OsAffx.30049.1.S1_x_at--1064--1671Chr09:16358342..16358366 (25 bp)
AGCCGGCGAGGCTCGCGTTCAAGAA
LOC_Os09g26920
OsAffx.30049.1.S1_x_at--657--5611Chr09:16358374..16358398 (25 bp)
GACAAGCTGAGGTACACCGTGACGT
LOC_Os09g26920
OsAffx.30049.1.S1_x_at--1062--7011Chr09:16358385..16358409 (25 bp)
GTACACCGTGACGTTCAAGTCGACG
LOC_Os09g26920
OsAffx.30049.1.S1_x_at--592--6751Chr09:16358397..16358421 (25 bp)
GTTCAAGTCGACGACGCCCGGTGGC
LOC_Os09g26920
Target Sequence 
GACGTGCCAGCGGAAGCTGTCCAGCCCCGGGGACCTCAACTACCCGTCGTTCTCCGTCGTGTTCGGCCGGCGGTCGTCGT
CGTCGCGCAGCACCACCGTCAAGTACCGGCGCGAGCTGACCAACGTCGGCGACGGCAGGTCGGTGTACACCGCGAGGGTC
ACCGGGCCGAGCGACATAGCCGTGGCCGTGAAGCCGGCGAGGCTCGCGTTCAAGAAGGCCGGGGACAAGCTGAGGTACAC
CGTGACGTTCAAGTCGACGACGCCCGGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30049.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis