Browse Element(s) Details

Os.4614.1.S1_a_at

Description

gb:AK064829.1
DB_XREF= gi:32974847
TID=Os.4614.1
CNT=38
FEA=FLmRNA
TIER=FL+Stack
STK=17
UG=Os.4614 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-202-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000F09, full insert sequence.
FL= gb:AK104662.1 gb:AK104643.1 gb:AK104284.1 gb:AK104607.1 gb:AK059998.1 gb:AK119668.1 gb:AK106124.1 gb:AK103939.1 gb:AK104569.1 gb:AK104563.1 gb:AK104383.1 gb:AK104455.1 gb:AK104632.1 gb:AK109334.2 gb:AK105020.2 gb:AK104310.1 gb:AK104307.1 gb:AK106204.1 gb:AK061687.1 gb:AK064829.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os02g40260	11/11	Leucine Rich Repeat family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os02g40240	Os.11890.1.S1_at	11/11	2	+	24344861..24348617	Leucine Rich Repeat family protein, expressed
LOC_Os02g40250	Os.10263.1.S1_at	2/11	2	+	24355225..24363775	retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250	OsAffx.10222.1.S1_x_at	2/11	2	+	24355225..24363775	retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250	OsAffx.22442.1.S1_x_at	1/11	2	+	24355225..24363775	retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250	OsAffx.6693.1.S1_at	1/11	2	+	24355225..24363775	retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250	Os.45902.1.A1_x_at	1/11	2	+	24355225..24363775	retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250	Os.51841.1.S1_x_at	1/11	2	+	24355225..24363775	retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250	Os.11828.1.S1_at	1/11	2	+	24355225..24363775	retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40260	Os.4614.1.S1_a_at	11/11	2	+	24366937..24368621	Leucine Rich Repeat family protein, expressed
LOC_Os02g40260	Os.4614.2.S1_x_at	11/11	2	+	24366937..24368621	Leucine Rich Repeat family protein, expressed
LOC_Os02g40270	OsAffx.12426.1.S1_at	11/11	2	+	24375022..24376804	hypothetical protein
LOC_Os02g40280	OsAffx.12427.1.S1_at	11/11	2	+	24384732..24390515	Piwi domain containing protein, expressed
LOC_Os02g40280	OsAffx.2925.1.S1_at	10/11	2	+	24384732..24390515	Piwi domain containing protein, expressed
LOC_Os02g40280	OsAffx.10566.1.S1_at	1/11	2	+	24384732..24390515	Piwi domain containing protein, expressed
LOC_Os02g40300	NA	NA	2	+	24391662..24392900	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0000904	biological_process	cellular morphogenesis during differentiation
GO:0007165	biological_process	signal transduction
GO:0009826	biological_process	unidimensional cell growth
GO:0009505	cellular_component	cell wall (sensu Magnoliophyta)
GO:0005515	molecular_function	protein binding
GO:0009927	molecular_function	histidine phosphotransfer kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4614.1.S1_a_at--403--449	1	Chr02:24368203..24368227 (25 bp)	GCCGGAGCTGCCAACGCTGCGGCGG	LOC_Os02g40260
Os.4614.1.S1_a_at--305--385	1	Chr02:24368281..24368305 (25 bp)	CTGCACGAGTGAGCCCGGCGCCACG	LOC_Os02g40260
Os.4614.1.S1_a_at--838--401	1	Chr02:24368360..24368384 (25 bp)	CGTCTCGGGGTGGTATTTGCTCTTG	LOC_Os02g40260
Os.4614.1.S1_a_at--222--379	1	Chr02:24368363..24368387 (25 bp)	CTCGGGGTGGTATTTGCTCTTGTAT	LOC_Os02g40260
Os.4614.1.S1_a_at--899--687	1	Chr02:24368384..24368408 (25 bp)	GTATTCTTGTGTTCGTTTGTTGTGC	LOC_Os02g40260
Os.4614.1.S1_a_at--787--1021	1	Chr02:24368385..24368409 (25 bp)	TATTCTTGTGTTCGTTTGTTGTGCT	LOC_Os02g40260
Os.4614.1.S1_a_at--183--13	1	Chr02:24368386..24368410 (25 bp)	ATTCTTGTGTTCGTTTGTTGTGCTC	LOC_Os02g40260
Os.4614.1.S1_a_at--919--1055	1	Chr02:24368387..24368411 (25 bp)	TTCTTGTGTTCGTTTGTTGTGCTCG	LOC_Os02g40260
Os.4614.1.S1_a_at--871--1083	1	Chr02:24368390..24368414 (25 bp)	TTGTGTTCGTTTGTTGTGCTCGTGA	LOC_Os02g40260
Os.4614.1.S1_a_at--1064--741	1	Chr02:24368392..24368416 (25 bp)	GTGTTCGTTTGTTGTGCTCGTGAGT	LOC_Os02g40260
Os.4614.1.S1_a_at--424--671	1	Chr02:24368394..24368418 (25 bp)	GTTCGTTTGTTGTGCTCGTGAGTCG	LOC_Os02g40260

Target Sequence

GCCGGAGCTGCCAACGCTGCGGCGGCGCCGGCGGACAGGGTGGTCAAGGACTACTCCAGCTACGTGACGTACGCCACCCT
GCACGAGTGAGCCCGGCGCCACGGCACGGGCGCACGACGTGCGTGCATGCATGCAGTAGGGGACAGCTAGAAGCTAGCGT
CTCGGGGTGGTATTTGCTCTTGTATTCTTGTGTTCGTTTGTTGTGCTCGTGAGTCG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis