Browse Element(s) Details


OsAffx.12426.1.S1_at

Description tigr:9630.m03890
TID=OsAffx.12426.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4027011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40250Os.10263.1.S1_at2/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250OsAffx.10222.1.S1_x_at2/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250OsAffx.22442.1.S1_x_at1/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250OsAffx.6693.1.S1_at1/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250Os.45902.1.A1_x_at1/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250Os.51841.1.S1_x_at1/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250Os.11828.1.S1_at1/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40260Os.4614.1.S1_a_at11/112+24366937..24368621Leucine Rich Repeat family protein, expressed
LOC_Os02g40260Os.4614.2.S1_x_at11/112+24366937..24368621Leucine Rich Repeat family protein, expressed
LOC_Os02g40270OsAffx.12426.1.S1_at11/112+24375022..24376804hypothetical protein
LOC_Os02g40280OsAffx.12427.1.S1_at11/112+24384732..24390515Piwi domain containing protein, expressed
LOC_Os02g40280OsAffx.2925.1.S1_at10/112+24384732..24390515Piwi domain containing protein, expressed
LOC_Os02g40280OsAffx.10566.1.S1_at1/112+24384732..24390515Piwi domain containing protein, expressed
LOC_Os02g40300NANA2+24391662..24392900retrotransposon protein, putative, unclassified
LOC_Os02g40310Os.49896.1.S1_at1/112+24394454..24397332retrotransposon protein, putative, unclassified, expressed
LOC_Os02g40320OsAffx.12428.1.S1_at10/112+24397660..24403443PAZ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12426.1.S1_at--1094--2511Chr02:24375657..24375788 (25 bp)
AACTTAAGCCGGGTGCTCATTGCCT
LOC_Os02g40270
OsAffx.12426.1.S1_at--41--6611Chr02:24375590..24375614 (25 bp)
GATTGTGCTAATTGAGTATCGCCTA
LOC_Os02g40270
OsAffx.12426.1.S1_at--291--1311Chr02:24375524..24375548 (25 bp)
AGATGGATATTCTATCTACGCTCCA
LOC_Os02g40270
OsAffx.12426.1.S1_at--594--5111Chr02:24375467..24375491 (25 bp)
GCACATCAACACTGGTCATTTCGGC
LOC_Os02g40270
OsAffx.12426.1.S1_at--1149--9591Chr02:24375452..24375476 (25 bp)
TCATTTCGGCACCATTGATCTGACA
LOC_Os02g40270
OsAffx.12426.1.S1_at--61--5611Chr02:24375431..24375455 (25 bp)
GACAATTTTTGCTATCCCGAAAGCG
LOC_Os02g40270
OsAffx.12426.1.S1_at--496--4171Chr02:24375416..24375440 (25 bp)
CCCGAAAGCGGTCCTGGTTGATTTG
LOC_Os02g40270
OsAffx.12426.1.S1_at--484--3331Chr02:24375260..24375284 (25 bp)
CACTCACATTGAGCGCGAGACATGA
LOC_Os02g40270
OsAffx.12426.1.S1_at--152--4431Chr02:24375188..24375212 (25 bp)
GCCATCCCGATGGTGTTATCAGGAA
LOC_Os02g40270
OsAffx.12426.1.S1_at--100--5571Chr02:24375120..24375144 (25 bp)
GAAAGCTTGTCTTTTACACCTCAAA
LOC_Os02g40270
OsAffx.12426.1.S1_at--542--10231Chr02:24375074..24375098 (25 bp)
TATTGGCCCGTAATCTGGACGGCAT
LOC_Os02g40270
Target Sequence 
AACTTAAGCCGGGTGCTCATTGCCTCCAACCTCTGATGACCCCTCCTCGAGGCATTTATGCAGTTGGGATTGTGCTAATT
GAGTATCGCCTAATTATTAAGGGTCAAAAGGAGGAAGAAGATCAAGTGTTAATAGATGGATATTCTATCTACGCTCCATC
TTTCTATGCAGATTTTGAAAAGCTCATATGGCACATCAACACTGGTCATTTCGGCACCATTGATCTGACAATTTTTGCTA
TCCCGAAAGCGGTCCTGGTTGATTTGGAGTTTGAGCTGGGTGTTGGCAAGCTACCTCCACTCACATTGAGCGCGAGACAT
GATAAACATTTCCCCATAACAGTTTATAAATACTACAACCATTCGGGTTGCCATCCCGATGGTGTTATCAGGAACTGTAG
ATTCGGTACAGAATATGATTTTGACGATTTTCTATGTGAAAGCTTGTCTTTTACACCTCAAAAATATGGAAAGAGTTCAA
AAATATTGGCCCGTAATCTGGACGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis