Browse Element(s) Details


Os.8898.1.S1_s_at

Description gb:AY030360.1
DB_XREF= gi:30313363
TID=Os.8898.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8898 (NCBI UniGene Cluster)
DEF=Oryza sativa putative transmembrane protein mRNA, complete cds.
PROD=putative transmembrane protein
FL= gb:AK072518.1 gb:AY030360.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4009011/11transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40050NANA2+24248435..24249157retrotransposon protein, putative, unclassified
LOC_Os02g40060NANA2+24250189..24251586retrotransposon protein, putative, unclassified
LOC_Os02g40070Os.49859.1.S1_at11/112+24255807..24260428AP2/EREBP transcription factor BABY BOOM, putative, expressed
LOC_Os02g40070OsAffx.23957.2.S1_x_at11/112+24255807..24260428AP2/EREBP transcription factor BABY BOOM, putative, expressed
LOC_Os02g40080Os.6402.1.S1_at11/112+24262282..24264132Tic20, putative, expressed
LOC_Os02g40090Os.8898.1.S1_s_at11/112+24264370..24267805transporter, putative, expressed
LOC_Os02g40090Os.34876.1.S1_at11/112+24264370..24267805transporter, putative, expressed
LOC_Os02g40100Os.14160.1.S1_at11/112+24270631..24275141expressed protein
LOC_Os02g40110OsAffx.24657.1.S1_at11/112+24277094..24278935expressed protein
LOC_Os02g40120OsAffx.12423.1.S1_at11/112+24282950..24283772hypothetical protein
LOC_Os02g40130OsAffx.24658.1.S1_at11/112+24287266..24288090Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8898.1.S1_s_at--734--6871Chr02:24264890..24264914 (25 bp)
GTATTGTCGTGCACAATTGCTGTTG
LOC_Os02g40090
Os.8898.1.S1_s_at--780--7631Chr02:24264866..24264890 (25 bp)
GGGACCAATCTAAGCCAGTTCATAT
LOC_Os02g40090
Os.8898.1.S1_s_at--1030--1251Chr02:24264833..24264857 (25 bp)
AGATTCACAGCTGTCTCATTTCAAG
LOC_Os02g40090
Os.8898.1.S1_s_at--23--7171Chr02:24264821..24264845 (25 bp)
GTCTCATTTCAAGTTCTAGGCCATA
LOC_Os02g40090
Os.8898.1.S1_s_at--824--5751Chr02:24264792..24264816 (25 bp)
GACGATTCTTGTATTGACCTTGGGT
LOC_Os02g40090
Os.8898.1.S1_s_at--1064--8391Chr02:24264746..24264770 (25 bp)
GGCCTTAATTTTCACGTAGTCCTTG
LOC_Os02g40090
Os.8898.1.S1_s_at--360--7271Chr02:24264728..24264752 (25 bp)
GTCCTTGGCATGATGCTTGCTGTGA
LOC_Os02g40090
Os.8898.1.S1_s_at--761--5251Chr02:24264684..24264708 (25 bp)
GAATGCTTCGTCAAAACCGGGAGGC
LOC_Os02g40090
Os.8898.1.S1_s_at--864--9431Chr02:24264641..24264665 (25 bp)
TCGGTGCCCAGCGAGAAAACTCAGA
LOC_Os02g40090
Os.8898.1.S1_s_at--1092--10371Chr02:24264562..24264586 (25 bp)
TTTTACAGCTCCATTGCTTAGCGAG
LOC_Os02g40090
Os.8898.1.S1_s_at--1060--10091Chr02:24264444..24264468 (25 bp)
TATGGCAGGAACTAAGCGCGACGAT
LOC_Os02g40090
Target Sequence 
GTATTGTCGTGCACAATTGCTGTTGGGACCAATCTAAGCCAGTTCATATGCATTGGAAGATTCACAGCTGTCTCATTTCA
AGTTCTAGGCCATATGAAGACGATTCTTGTATTGACCTTGGGTTTTCTTTTCTTTGGAAAAGAGGGCCTTAATTTTCACG
TAGTCCTTGGCATGATGCTTGCTGTGATTGGCATGATTTGGTACGGGAATGCTTCGTCAAAACCGGGAGGCAAAGAGNGG
CAGNTTTACTCGGTGCCCAGCGAGAAAACTCAGAAGTCATCACAATCAGAGCTTGACCAGAAGGTCTGAAACAAAGTTGT
TTCACTATTTTTACAGCTCCATTGCTTAGCGAGCATTGAGAAGACCACGATCTGATTTATTCTTTTTTTTTCTGGTAAGT
TTAAAGATGTTTCTGTACAACTGAAATTCATACCAGACAAACAGAATATGGCAGGAACTAAGCGCGACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8898.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis