Browse Element(s) Details


Os.55217.1.S1_at

Description gb:AK107683.1
DB_XREF= gi:32992892
TID=Os.55217.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55217 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-A11, full insert sequence.
FL= gb:AK107683.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3911011/11expressed protein
LOC_Os04g425701/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39040OsAffx.28818.1.S1_at9/117+23404939..23406846hypothetical protein
LOC_Os07g39060OsAffx.5574.1.S1_at10/117+23413891..23415192hypothetical protein
LOC_Os07g39070Os.47591.1.S1_s_at10/117+23417324..234207565-formyltetrahydrofolate cycloligase, putative, expressed
LOC_Os07g39080OsAffx.16624.1.S1_x_at11/117+23421183..23422211hypothetical protein
LOC_Os07g39080OsAffx.16624.1.S1_at11/117+23421183..23422211hypothetical protein
LOC_Os07g39090OsAffx.16625.1.S1_at11/117+23423711..23429192hypothetical protein
LOC_Os07g39100OsAffx.16626.1.S1_at11/117+23430025..23430687hypothetical protein
LOC_Os07g39110Os.55217.1.S1_at11/117+23431681..23433157expressed protein
LOC_Os07g39120Os.25190.1.A1_x_at11/117+23436812..23439851hypothetical protein
LOC_Os07g39120Os.25190.1.A1_at11/117+23436812..23439851hypothetical protein
LOC_Os07g39120OsAffx.16627.1.S1_at9/117+23436812..23439851hypothetical protein
LOC_Os07g39130NANA7+23441148..23441426hypothetical protein
LOC_Os07g39140OsAffx.28819.1.S1_at11/117+23442507..23442845hypothetical protein
LOC_Os07g39150OsAffx.32166.1218.S1_x_at9/117+23454664..23456106hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007389biological_processpattern specification
GO:0009887biological_processorgan morphogenesis
GO:0019827biological_processstem cell maintenance
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55217.1.S1_at--558--9511Chr07:23432571..23432595 (25 bp)
TCTACTCCGGAAGCACTGTCAACGG
LOC_Os07g39110
Os.55217.1.S1_at--336--7531Chr07:23432659..23432683 (25 bp)
GTGGCTCTGGAGCAACCACCCGCAG
LOC_Os07g39110
Os.55217.1.S1_at--819--691Chr07:23432843..23432867 (25 bp)
ATGAGCACGTGGTCGGTGGCATCCA
LOC_Os07g39110
Os.55217.1.S1_at--920--10171Chr07:23432988..23433012 (25 bp)
TATACCGAGCTGTTAGAGATTTCCA
LOC_Os07g39110
Os.55217.1.S1_at--342--6051Chr07:23433003..23433027 (25 bp)
GAGATTTCCATTAACCTTTGCTAGT
LOC_Os07g39110
Os.55217.1.S1_at--402--4311Chr07:23433017..23433041 (25 bp)
CCTTTGCTAGTGTTATTGTTGCTGA
LOC_Os07g39110
Os.55217.1.S1_at--587--52Chr07:23433031..23433055 (25 bp)
ATTGTTGCTGATCTTGTTCTGCATG
LOC_Os07g39110
Os.55217.1.S1_at--329--8851Chr07:23433039..23433063 (25 bp)
TGATCTTGTTCTGCATGTTCCAGCT
LOC_Os07g39110
Os.55217.1.S1_at--834--1571Chr07:23433060..23433084 (25 bp)
AGCTCAAGTATTTATCATCAATTTT
LOC_Os07g39110
Os.55217.1.S1_at--538--2251Chr07:23433087..23433111 (25 bp)
AAATTTCTCTTCATGTTTTAGTGTA
LOC_Os07g39110
Os.55217.1.S1_at--450--1111Chr07:23433106..23433130 (25 bp)
AGTGTATTGCTCATTAATCTCAAAG
LOC_Os07g39110
Target Sequence 
TCTACTCCGGAAGCACTGTCAACGGCGCCGGTGGTTACAGTAACGGCGGATGCGGCGGCGGAACCATAGAACTGTCCATG
ATTANGACGTGGCTCTGGAGCAACCACCCGCAGNCGCAGCCATCGCCGCNGCAGCACGCTGATCAGGACATGAGCACCGA
TGCGAGCGCGAGCAGCTACGCGTGCTCCGACGTGCTGGTGGGGAGCTGCAACGGCGGCGGCGGNGGCNCCGGGGGCACGG
CGAGCTNGCATGGGCAGAGCCTGGCGCTATCGATGAGCACGTGGTCGGTGGCATCCACTGCAGGGGGCAGNGTCGTCGTC
GCGGCCGAGAGCTCGTCGTCGGAGAACNGGCGGGTGGATTCGCCGGGCGGCGCCGTCCCGAGGAAATCCATCGACACCTT
CGGGCAGAGGACGTCTATATACCGAGCTGTTAGAGATTTCCATTAACCTTTGCTAGTGTTATTGTTGCTGATCTTGTTCT
GCATGTTCCAGCTCAAGTATTTATCATCAATTTTTTAAATTTCTCTTCATGTTTTAGTGTATTGCTCATTAATCTCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55217.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis