Browse Element(s) Details


Os.47591.1.S1_s_at

Description gb:AK067155.1
DB_XREF= gi:32977173
TID=Os.47591.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47591 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097O11, full insert sequence.
FL= gb:AK106065.1 gb:AK067155.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3907010/115-formyltetrahydrofolate cycloligase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39010Os.48332.1.A1_s_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.1.S1_s_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010Os.11693.1.S1_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.1.S1_x_at4/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010Os.23259.1.S1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.2.A1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.9194.3.A1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39020Os.47325.1.S1_at11/117+23396515..23398959Subtilisin N-terminal Region family protein, expressed
LOC_Os07g39030OsAffx.5573.1.S1_at11/117+23399311..23400153hypothetical protein
LOC_Os07g39040OsAffx.28818.1.S1_at9/117+23404939..23406846hypothetical protein
LOC_Os07g39060OsAffx.5574.1.S1_at10/117+23413891..23415192hypothetical protein
LOC_Os07g39070Os.47591.1.S1_s_at10/117+23417324..234207565-formyltetrahydrofolate cycloligase, putative, expressed
LOC_Os07g39080OsAffx.16624.1.S1_x_at11/117+23421183..23422211hypothetical protein
LOC_Os07g39080OsAffx.16624.1.S1_at11/117+23421183..23422211hypothetical protein
LOC_Os07g39090OsAffx.16625.1.S1_at11/117+23423711..23429192hypothetical protein
LOC_Os07g39100OsAffx.16626.1.S1_at11/117+23430025..23430687hypothetical protein
LOC_Os07g39110Os.55217.1.S1_at11/117+23431681..23433157expressed protein
LOC_Os07g39120Os.25190.1.A1_x_at11/117+23436812..23439851hypothetical protein
LOC_Os07g39120Os.25190.1.A1_at11/117+23436812..23439851hypothetical protein
LOC_Os07g39120OsAffx.16627.1.S1_at9/117+23436812..23439851hypothetical protein
LOC_Os07g39130NANA7+23441148..23441426hypothetical protein
LOC_Os07g39140OsAffx.28819.1.S1_at11/117+23442507..23442845hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0046653biological_processtetrahydrofolate metabolism
GO:0005739cellular_componentmitochondrion
GO:0030272molecular_function5-formyltetrahydrofolate cyclo-ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47591.1.S1_s_at--271--2071Chr07:23418503..23418527 (25 bp)
ACTTGATGCTAGTGGGAATGCTCGT
LOC_Os07g39070
Os.47591.1.S1_s_at--1--6151NONE
GAGGGTACTATGACACATTCTTGAT
NONE
Os.47591.1.S1_s_at--828--5571Chr07:23419744..23419768 (25 bp)
GAAAGGGTGGGATCAGCCTCTTCTA
LOC_Os07g39070
Os.47591.1.S1_s_at--751--10551Chr07:23420394..23420414 (21 bp)
TTCTAGTCGCGCTTTCATACTCGGT
LOC_Os07g39070
Os.47591.1.S1_s_at--781--931Chr07:23420426..23420450 (25 bp)
AGGAAGGCATCATCCCAGTCAACTC
LOC_Os07g39070
Os.47591.1.S1_s_at--230--6291Chr07:23420455..23420479 (25 bp)
GATGTTCCTATTGATGCTCTGGTCT
LOC_Os07g39070
Os.47591.1.S1_s_at--342--571Chr07:23420481..23420505 (25 bp)
ATCCTCTGGCATCATTCCAATCAGT
LOC_Os07g39070
Os.47591.1.S1_s_at--66--3071Chr07:23420499..23420523 (25 bp)
AATCAGTCCTGCAGCATTGGCGAGG
LOC_Os07g39070
Os.47591.1.S1_s_at--757--8811Chr07:23420536..23420560 (25 bp)
TGATTGGTTTCTGCTTTGCGTTGAC
LOC_Os07g39070
Os.47591.1.S1_s_at--359--10291Chr07:23420550..23420574 (25 bp)
TTTGCGTTGACAGTCAACCTCTCTT
LOC_Os07g39070
Os.47591.1.S1_s_at--758--5191Chr07:23420670..23420694 (25 bp)
GAATTGATTTTGTCTGCGTATTGTA
LOC_Os07g39070
Target Sequence 
ACTTGATGCTAGTGGGAATGCTCGTGNAGAAGTGTTGTCAACCTCTTCNCCNGTNGATCTTTTTCTATTGCNCTGGACAA
GCTTTTGATAGGACTGGACGAAGATTAGGACGTGGTGGAGGGTACTATGACACATTCTTGATGAGATATCAAGAACTTGC
TAAAGAGAAAGGGTGGGATCAGCCTCTTCTAGTCGCGCTTTCATACTCGGTGCAAATTTTGGAGGAAGGCATCATCCCAG
TCAACTCAACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCCAATCAGTCCTGCAGCATTGGCGAGG
ATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTCTCTTCCCTGAACAACACTTTTTTAGATAATGCT
TCACCAAAGCTGAGAAATTTTTCGATCAAGTGATTTTGTTACGCNATGTATCTGTATTCTGAATATGAATTGATTTTGTC
TGCGTATTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47591.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis