Browse Element(s) Details


Os.47325.1.S1_at

Description gb:AK107610.1
DB_XREF= gi:32992819
TID=Os.47325.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47325 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-C05, full insert sequence.
FL= gb:AK107610.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3902011/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38990Os.36711.1.S1_at11/117+23369857..23372191expressed protein
LOC_Os07g39000OsAffx.16622.1.S1_at2/117+23376944..23379350expressed protein
LOC_Os07g39000Os.27237.3.A1_x_at1/117+23376944..23379350expressed protein
LOC_Os07g39010Os.48332.1.A1_s_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.1.S1_s_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010Os.11693.1.S1_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.1.S1_x_at4/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010Os.23259.1.S1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.2.A1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.9194.3.A1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39020Os.47325.1.S1_at11/117+23396515..23398959Subtilisin N-terminal Region family protein, expressed
LOC_Os07g39030OsAffx.5573.1.S1_at11/117+23399311..23400153hypothetical protein
LOC_Os07g39040OsAffx.28818.1.S1_at9/117+23404939..23406846hypothetical protein
LOC_Os07g39060OsAffx.5574.1.S1_at10/117+23413891..23415192hypothetical protein
LOC_Os07g39070Os.47591.1.S1_s_at10/117+23417324..234207565-formyltetrahydrofolate cycloligase, putative, expressed
LOC_Os07g39080OsAffx.16624.1.S1_x_at11/117+23421183..23422211hypothetical protein
LOC_Os07g39080OsAffx.16624.1.S1_at11/117+23421183..23422211hypothetical protein
LOC_Os07g39090OsAffx.16625.1.S1_at11/117+23423711..23429192hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0010103biological_processstomatal complex morphogenesis
GO:0042127biological_processregulation of cell proliferation
GO:0005576cellular_componentextracellular region
GO:0009897cellular_componentexternal side of plasma membrane
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47325.1.S1_at--221--1811Chr07:23398597..23398621 (25 bp)
ACGCTAACGCGGACGGTGACCAAGG
LOC_Os07g39020
Os.47325.1.S1_at--711--1851Chr07:23398625..23398649 (25 bp)
ACGAGAAGCCGGAGACGTACAGCGT
LOC_Os07g39020
Os.47325.1.S1_at--150--4671Chr07:23398756..23398780 (25 bp)
GCGGGAGGACACGTCAACCAGAGCT
LOC_Os07g39020
Os.47325.1.S1_at--358--2651Chr07:23398771..23398795 (25 bp)
AACCAGAGCTGGGATTTCGGGCACA
LOC_Os07g39020
Os.47325.1.S1_at--339--191Chr07:23398784..23398808 (25 bp)
ATTTCGGGCACATCTCGTGGGAGAA
LOC_Os07g39020
Os.47325.1.S1_at--283--9511Chr07:23398796..23398820 (25 bp)
TCTCGTGGGAGAATCGGAAGCATCA
LOC_Os07g39020
Os.47325.1.S1_at--223--9451Chr07:23398809..23398833 (25 bp)
TCGGAAGCATCAGGTCAGGAGCCCT
LOC_Os07g39020
Os.47325.1.S1_at--813--9631Chr07:23398823..23398847 (25 bp)
TCAGGAGCCCTGTGGTGTTCATGTG
LOC_Os07g39020
Os.47325.1.S1_at--1023--7411Chr07:23398837..23398861 (25 bp)
GTGTTCATGTGGAACTAACTGATGA
LOC_Os07g39020
Os.47325.1.S1_at--316--731Chr07:23398863..23398887 (25 bp)
ATGTTGATGGGTTGATCTGTCGTGA
LOC_Os07g39020
Os.47325.1.S1_at--1037--791Chr07:23398935..23398959 (25 bp)
ATGGGAATTCTAAATGTTGGCAGCT
LOC_Os07g39020
Target Sequence 
ACGCTAACGCGGACGGTGACCAAGGTGTACGAGAAGCCGGAGACGTACAGCGTGGCCGTGTCGGCGCCGGCCGGCGTGAA
GGTGACCGTGAGGCCGGCGACGCTGGAGTTCAAGGAGAAGAACGAGGAGAAGAGCTACACGGTGGAGTTCACGAGCGTGG
CGGGAGGACACGTCAACCAGAGCTGGGATTTCGGGCACATCTCGTGGGAGAATCGGAAGCATCAGGTCAGGAGCCCTGTG
GTGTTCATGTGGAACTAACTGATGAAATGTTGATGGGTTGATCTGTCGTGAGAGATGAAGAATAATATACTTGTGGGAGA
TGAATTAATGAATTATCAATGGGAATTCTAAATGTTGGCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47325.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis