Browse Element(s) Details


OsAffx.16622.1.S1_at

Description tigr:9635.m03884
TID=OsAffx.16622.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3898011/11hypothetical protein
LOC_Os07g390002/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38930OsAffx.5572.1.S1_at10/117+23342395..23346718Glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g38940Os.57174.1.S1_at11/117+23347747..23350794Ubiquitin-conjugating enzyme E2 E3, putative, expressed
LOC_Os07g38940OsAffx.16621.1.S1_at10/117+23347747..23350794Ubiquitin-conjugating enzyme E2 E3, putative, expressed
LOC_Os07g38950Os.18307.1.S1_at11/117+23351259..23353084expressed protein
LOC_Os07g38960Os.37713.1.S1_at11/117+23356083..23357999Chlorophyll a-b binding protein 7, chloroplast precursor, putative, expressed
LOC_Os07g38970Os.38799.1.S1_at11/117+23359440..23364233Succinyl-CoA ligase alpha-chain 2, mitochondrial precursor, putative, expressed
LOC_Os07g38980OsAffx.16622.1.S1_at11/117+23365095..23369130hypothetical protein
LOC_Os07g38980OsAffx.18481.1.S1_x_at2/117+23365095..23369130hypothetical protein
LOC_Os07g38990Os.36711.1.S1_at11/117+23369857..23372191expressed protein
LOC_Os07g39000OsAffx.16622.1.S1_at2/117+23376944..23379350expressed protein
LOC_Os07g39000Os.27237.3.A1_x_at1/117+23376944..23379350expressed protein
LOC_Os07g39010Os.48332.1.A1_s_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.1.S1_s_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010Os.11693.1.S1_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.1.S1_x_at4/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010Os.23259.1.S1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.2.A1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.9194.3.A1_at1/117+23387704..23395217lactose permease, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16622.1.S1_at--545--7371Chr07:23365646..23365670 (25 bp)
GTGATCCACAACACAAGTTTCCTCG
LOC_Os07g38980
OsAffx.16622.1.S1_at--5--1732Chr07:23378871..23378895 (25 bp)
ACCAGCGATGCCATCATGGTGGTGG
LOC_Os07g39000
OsAffx.16622.1.S1_at--804--1011Chr07:23365494..23365518 (25 bp)
AGGTCAGCCGGGAGAACCAGACGCC
LOC_Os07g38980
OsAffx.16622.1.S1_at--773--3472Chr07:23378957..23378981 (25 bp)
CAGGTTCAGCAGGATGCTCGGCAGC
LOC_Os07g39000
OsAffx.16622.1.S1_at--707--2231Chr07:23365390..23365414 (25 bp)
ACAATGGCGAGCTGTTGCTAGTGCA
LOC_Os07g38980
OsAffx.16622.1.S1_at--100--10051Chr07:23365372..23365396 (25 bp)
TAGTGCACCGTACCCTAAGTGGTGA
LOC_Os07g38980
OsAffx.16622.1.S1_at--1036--1071Chr07:23365345..23365369 (25 bp)
AGAGGTTGTACCAGGCGTACCGAGT
LOC_Os07g38980
OsAffx.16622.1.S1_at--802--5351Chr07:23365305..23365329 (25 bp)
GAAGATGGTGCCTGTCCGTGGTCTC
LOC_Os07g38980
OsAffx.16622.1.S1_at--936--8451Chr07:23365168..23365192 (25 bp)
TGGCCGGGAGCACATCGAAACCTAT
LOC_Os07g38980
OsAffx.16622.1.S1_at--704--5551Chr07:23365152..23365176 (25 bp)
GAAACCTATGATAACCTGGCAGATG
LOC_Os07g38980
OsAffx.16622.1.S1_at--1034--8171Chr07:23365128..23365152 (25 bp)
GGAACCATTGAACACTCATTCTATG
LOC_Os07g38980
Target Sequence 
GTGATCCACAACACAAGTTTCCTCGCCGTCGCCAAGCCCGGCGACAAGTGCTGGACGGCGGTCGACCTCAGCGATCATCT
CCGGCCGATCATGTCGTTCGCGGGCCCCTTCTATGCCGTCACCACTCACCAGCGATGCCATCATGGTGGTGGAGGTCAGC
CGGGAGAACCAGACGCCGCAGCTGGTGGAGGCCGCCGCGACCTGACATTGCAACACAGGTTCAGCAGGATGCTCGGCAGC
GCGCACCTGGTGGACAACAATGGCGAGCTGTTGCTAGTGCACCGTACCCTAAGTGGTGACAAGAGGTTGTACCAGGCGTA
CCGAGTGGATTTGGATGGGAGGAAGATGGTGCCTGTCCGTGGTCTCGGTGGTCGGGCCGTGTTCATCGGCCATGACTGCT
CGCTGTCCGTGTCCCCAGCCACATTCCCTCCATCGTTGGTGACGCCGTCTACCCGGGCTTCGGCTGTGGGGATAGAACTG
GCCGGGAGCACATCGAAACCTATGATAACCTGGCAGATGGAACCATTGAACACTCATTCTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis