Browse Element(s) Details


Os.38799.1.S1_at

Description gb:CB652937
DB_XREF= gi:29656662
DB_XREF=OSJNEc03H12.r
CLONE=OSJNEc03H12
TID=Os.38799.1
CNT=42
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.38799 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for succinyl-CoA sythetase (475 gene), partial sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3897011/11Succinyl-CoA ligase alpha-chain 2, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38930OsAffx.5572.1.S1_at10/117+23342395..23346718Glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g38940Os.57174.1.S1_at11/117+23347747..23350794Ubiquitin-conjugating enzyme E2 E3, putative, expressed
LOC_Os07g38940OsAffx.16621.1.S1_at10/117+23347747..23350794Ubiquitin-conjugating enzyme E2 E3, putative, expressed
LOC_Os07g38950Os.18307.1.S1_at11/117+23351259..23353084expressed protein
LOC_Os07g38960Os.37713.1.S1_at11/117+23356083..23357999Chlorophyll a-b binding protein 7, chloroplast precursor, putative, expressed
LOC_Os07g38970Os.38799.1.S1_at11/117+23359440..23364233Succinyl-CoA ligase alpha-chain 2, mitochondrial precursor, putative, expressed
LOC_Os07g38980OsAffx.16622.1.S1_at11/117+23365095..23369130hypothetical protein
LOC_Os07g38980OsAffx.18481.1.S1_x_at2/117+23365095..23369130hypothetical protein
LOC_Os07g38990Os.36711.1.S1_at11/117+23369857..23372191expressed protein
LOC_Os07g39000OsAffx.16622.1.S1_at2/117+23376944..23379350expressed protein
LOC_Os07g39000Os.27237.3.A1_x_at1/117+23376944..23379350expressed protein
LOC_Os07g39010Os.48332.1.A1_s_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.1.S1_s_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010Os.11693.1.S1_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.1.S1_x_at4/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010Os.23259.1.S1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.2.A1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.9194.3.A1_at1/117+23387704..23395217lactose permease, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006085biological_processacetyl-CoA biosynthesis
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009346cellular_componentcitrate lyase complex
GO:0004776molecular_functionsuccinate-CoA ligase (GDP-forming) activity
GO:0008815molecular_functioncitrate (pro-3S)-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38799.1.S1_at--145--6351Chr07:23362679..23362700 (22 bp)
GATGCTGCAGCCTTCATTCAGGAGA
LOC_Os07g38970
Os.38799.1.S1_at--505--6651Chr07:23363094..23363118 (25 bp)
GTTGCATTCATAGCTGGACTCACTG
LOC_Os07g38970
Os.38799.1.S1_at--626--6771Chr07:23363817..23363841 (25 bp)
GTTACTGTTGTTGAGTCACCAGCGA
LOC_Os07g38970
Os.38799.1.S1_at--929--5491Chr07:23363926..23363950 (25 bp)
GAAAACTTTTTGGTGCTCGTGGGCA
LOC_Os07g38970
Os.38799.1.S1_at--44--7491Chr07:23363944..23363968 (25 bp)
GTGGGCAACAGCGAGCAATTCCTTT
LOC_Os07g38970
Os.38799.1.S1_at--663--5191Chr07:23363958..23363982 (25 bp)
GCAATTCCTTTGTAGAGCCGCATTG
LOC_Os07g38970
Os.38799.1.S1_at--898--10691Chr07:23363980..23364004 (25 bp)
TTGCTGGCCGCGGAACTACTCAAAT
LOC_Os07g38970
Os.38799.1.S1_at--537--9891Chr07:23363996..23364020 (25 bp)
TACTCAAATCTTCCTTTTACCCTAG
LOC_Os07g38970
Os.38799.1.S1_at--836--9251Chr07:23364025..23364049 (25 bp)
TCCTCTTGCTTATCTTCGGTGTGAA
LOC_Os07g38970
Os.38799.1.S1_at--793--8311Chr07:23364064..23364088 (25 bp)
GGCTCACTTGTCTCTTTTCAATAAG
LOC_Os07g38970
Os.38799.1.S1_at--259--10131Chr07:23364170..23364194 (25 bp)
TATGACGACTTCTATCTTGGCTGTA
LOC_Os07g38970
Target Sequence 
GATGCTGCAGCCTTCATTCAGGAGAGCAAAACACAAAAGCCTGTTGTTGCATTCATAGCTGGACTCACTGCTCCACCTGG
GCGTCGCATGGGTCATGCTGGAGCAATTGTGTCAGGGGGCAAGGGTACGGCACAAGACAAAATCAAGGCTCTCAGAGAGG
CTGGGGTTACTGTTGTTGAGTCACCAGCGAAGATTGGTTCAACTATGTTCGAAATTTTCAAGCAACGCGGAATGTTAGAA
TAGGGAGAGCAAATGGTACAGTAGAGAAACATTGGAAAACTTTTTGGTGCTCGTGGGCAACAGCGAGCAATTCCTTTGTA
GAGCCGCATTGCTGGCCGCGGAACTACTCAAATCTTCCTTTTACCCTAGCCTTTCCTCTTGCTTATCTTCGGTGTGAAGA
TGGCCTACCTGAGGCTCACTTGTCTCTTTTCAATAAGACAGGATTCTCGAGTTATCGACATGATATTTTGTTTGGAAATG
GCGCAGAAACCTAAGATGTTTCTANTTTTTTTTTTCATTATGACGACTTCTATCTTGGCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis